GgaEX0000415 @ galGal3
Exon Skipping
Gene
ENSGALG00000000505 | KCNH6
Description
NA
Coordinates
chr27:2603654-2606415:+
Coord C1 exon
chr27:2603654-2603853
Coord A exon
chr27:2605466-2605718
Coord C2 exon
chr27:2606222-2606415
Length
253 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTTGCTTTCCGCAGGTG
3' ss Score
12.48
5' ss Seq
TAGGTGGAA
5' ss Score
-2.76
Exon sequences
Seq C1 exon
CTCTGATGTACGCCAGCATCTTTGGCAACGTCTCTGCCATCATCCAGCGCCTCTACTCGGGCACAGCTCGCTACCACACACAGATGCTGCGAGTGAAGGAGTTCATCCGCTTCCATCAGATCCCAAACCCGCTGCGCCAGCGCCTGGAGGAGTATTTCCAGCATGCCTGGTCCTACACCAACGGCATCGACATGAACGCG
Seq A exon
GTGCTGAAGGGCTTCCCTGACTGCCTGCAGGCAGACATCTGCCTCCACCTCAACCGCACACTGCTGCAGAACTGCAAGGCTTTCCGAGGAGCCAGCAAAGGCTGCCTGCGTGCCCTGGCCATGAAGTTCAAGACGACCCATGCACCGCCTGGAGACACCCTGGTGCACTACGGGGATGTCCTCACCACCCTCTACTTCATCTCCCGGGGCTCCATTGAGATCCTCAAGGAAGACATTGTGGTTGCCATCTTAG
Seq C2 exon
GGAAGAACGACATCTTTGGGGAGCCCATCAGCCTCTATGCCCGTCCAGGGAAGTCGAATGCCGATGTGAGGGCCCTGACCTACTGCGATTTGCACAAGATCCAGCGGGAGGATCTGCTGGAGGTCTTGGACATGTACCCAGCCTTCTCTGACAACTTCTGGAGCAACTTAGAGATCACCTTCAACCTGCGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(63.5=47.1)
C2:
PF0002724=cNMP_binding=PD(53.4=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCAACGTCTCTGCCATC
R:
AAGACCTCCAGCAGATCCTCC
Band lengths:
307-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]