RnoEX0046047 @ rn6
Exon Skipping
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94219949-94223970:+
Coord C1 exon
chr10:94219949-94220148
Coord A exon
chr10:94220316-94220568
Coord C2 exon
chr10:94223777-94223970
Length
253 bp
Sequences
Splice sites
3' ss Seq
GCCATACCCCCCTCCCGCAGGTG
3' ss Score
10.73
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCCTTATGTACGCCAGCATCTTTGGCAACGTGTCGGCCATCATCCAACGCCTGTACTCGGGCACTGCCCGCTACCACACGCAGATGCTGCGTGTCAAGGAGTTCATCCGCTTCCACCAGATCCCCAACCCACTGCGGCAGCGCCTGGAAGAGTATTTCCAGCACGCCTGGTCCTACACCAACGGCATTGACATGAACGCG
Seq A exon
GTGCTGAAGGGCTTCCCTGAGTGCCTGCAGGCGGACATCTGCCTGCACCTGCACCGCGCTCTGCTGCAGCACTGCCCCGCCTTCCGGGGCGCCAGCAAGGGGTGCCTGCGCGCGCTCGCGGTCAAGTTCAAGACCACGCACGCGCCGCCTGGGGACACGCTGGTGCACCTGGGCGACGTGCTCTCCACGCTCTACTTCATCTCCCGCGGCTCCATCGAGATCCTGCGCGATGATGTGGTCGTGGCCATTCTAG
Seq C2 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTTCATGCCAGGCCAGGCAAATCTAGCGCAGATGTGCGCGCCCTGACCTACTGCGACCTGCATAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTTGCAGACACCTTCTGGAATAAGCTGGAGGTCACCTTCAACCTGCGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF0002724=cNMP_binding=PD(53.4=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGTGTCAAGGAGTTCAT
R:
CAGGTTGAAGGTGACCTCCAG
Band lengths:
303-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]