GgaEX0000694 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198155267-198162268:-
Coord C1 exon
chr1:198162116-198162268
Coord A exon
chr1:198158683-198158700
Coord C2 exon
chr1:198155267-198155451
Length
18 bp
Sequences
Splice sites
3' ss Seq
CCTCACATTTTACTCATAAGACA
3' ss Score
0.32
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAGCACTGGATTTCCCCGCAGAATGCCAGCCACATCAAACCCATGCACCCCACCTCCATCCATGGAGTGGAGGACATGATCCGGCTGGGGGACTTGAATGAGGCAGGAATCCTTAGGAACCTGCTGATCCGCTACCGGGAGCATCTCATCTAT
Seq A exon
ACAAACTGCGGCGGGAGG
Seq C2 exon
ACATACACTGGTTCAATACTGGTGGCAGTAAACCCCTACCAGCTTCTACCCATCTATTCACCGGAGCAGATCCGCCTGTACACCAACAAAAAGATTGGGGAAATGCCACCACACATCTTTGCGATCGCTGACAACTGCTACTTCAACATGCAGCGCAACAACAAGGATCAGTGTTGTATCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
PF0006316=Myosin_head=FE(0.7=100)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAGGAACCTGCTGATCCGC
R:
TGCTCCGGTGAATAGATGGGT
Band lengths:
110-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]