DreEX0048768 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3113060-3116582:+
Coord C1 exon
chr18:3113060-3113212
Coord A exon
chr18:3115877-3115894
Coord C2 exon
chr18:3116398-3116582
Length
18 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCCTCTGTCTGAAGACC
3' ss Score
6.09
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAACACTGGATCTCTCCTCAAAATGCCACCAACATCAAGCCGATGCACCCGACCTCCATTCACGGTGTGGAAGACATGATCCGGCTGGGGGATCTGAACGAGGCGGGAATCCTCCGAAATCTGCTCATCCGATACAGAGAACACCTCATCTAT
Seq A exon
ACCAACTGTGGTGGTCGG
Seq C2 exon
ACGTATACGGGGTCCATCTTAGTGGCCGTCAACCCGTATCAGCTGCTTCCCATTTACACAGCAGACCAGATTCGCCTTTACACCAATAAAAAGATTGGAGAAATGCCTCCACACATCTTCGCCATCGCAGACAACTGCTATTTCAACATGCAGCGCAACAACAAAGACCAGTGCTGCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
PF0006316=Myosin_head=FE(0.7=100)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Inclusion Isoform:
ENSDART00000158508fB4071
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTGGAAGACATGATCCG
R:
GCCACTAAGATGGACCCCGTA
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]