MmuEX0030572 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105246697-105251212:-
Coord C1 exon
chr7:105251060-105251212
Coord A exon
chr7:105247984-105248001
Coord C2 exon
chr7:105246697-105246881
Length
18 bp
Sequences
Splice sites
3' ss Seq
TACCTGTTACTTTGTAACAGACC
3' ss Score
7.42
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAACACTGGATATCCCCTCAGAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCACGGCGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATCCTTCGAAACCTTCTCATTCGCTACCGGGACCACCTCATCTAT
Seq A exon
ACCAGCTGTGGAGGACGG
Seq C2 exon
ACGTACACAGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTACACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTCGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(38.4=54.9)
A:
PF0006316=Myosin_head=FE(0.7=100)
C2:
PF0006316=Myosin_head=FE(47.3=100)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCAACGAGGCAGGCATC
R:
AGATGGAGAGCAGCTGGTAGG
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: