GgaEX0000846 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10430895-10432046:+
Coord C1 exon
chr17:10430895-10430969
Coord A exon
chr17:10431386-10431561
Coord C2 exon
chr17:10431935-10432046
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATCTTATACACAGAAG
3' ss Score
5.38
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GCACTCAAACTGAAAACTGGTGTGAAAGGGGATGCACCAACTACCTTGGCAACTACAAGCTTTTGTAAAAAGGAG
Seq A exon
AAGTTCCAGAGGCGCTTGTAGAATTTCAGACTTCAGTTTACTGTTTAATATTGGGGATGGAGGGAGAAGGGGACAGATTTCAGGAGATACATATGAAGAACACATGACAGAAGCAGAGTTTGGAGGAAAGACAGCTGTAACAGTACCATTTCTAAACACAACCTGAACTACAAAAT
Seq C2 exon
CCTTGGGAGTCCCAGTCTTTCTGCAGTAATTTTCCTCATGAGGTTGTCTGTGCAGATTCTTGGGGCCAGTCCTTGCTGGTTTCTACAGATGCTGGCATCTTGTTAATAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX3-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078017=CNH=PU(7.3=57.9)
Main Inclusion Isoform:
ENSGALT00000001243fB84
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAAACTGAAAACTGGTGT
R:
CATCTATTAACAAGATGCCAGCAT
Band lengths:
187-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]