GgaEX0000965 @ galGal3
Exon Skipping
Gene
ENSGALG00000000950 | FAM125B
Description
NA
Coordinates
chr17:10689888-10694897:+
Coord C1 exon
chr17:10689888-10690138
Coord A exon
chr17:10693207-10693392
Coord C2 exon
chr17:10694775-10694897
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTTATTTTTAAGATC
3' ss Score
9.19
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GACTCGTGGCGGCACAGGACCGAGGCGGGAGACGCGGATCGGAGCACGCCGGAGCCGCGCGGTGCGGAGGAGCCGCTCCCAGTGGCCGGCCCGGGCCGCCGGTGAGGCCCTGCCCGCCGCCCCCTGCGCTAGGCCGCTCCCCCGCCGCCGCCGCTCCTCCCGCCGCGCCGCCCCCGCCCCGCCGGGCGATGAGGAGCTGCTTCTGCCTGCGCCGAGGGAGCCGCGAGCCGCCGCCCGCCGCGCGGGCAACA
Seq A exon
ATCAAAGGTGTGATAGCAAAGAAACTAAACTTTGCAGGCGCCCGAGGGGGAGTTGAAATGTAACTCATGGTCTGCATCAGCCCGAAGCTCTGCTGACCTGTTCCAAGTTCAGAAAACATTTACTGAGCACGCAGGCCGGTTCTTGCTGCTCTGCACCAGCTCCAGCTGCATCCCAGTGCCCTGCGG
Seq C2 exon
GATCAGTCCACAATGCCTGAGGTGCGAGATCTCTCCGACGCCTTGCCTGATGTGCCAATGGATCCCATCACAGGGGTTGGCGTGGTTGCATCCCGGAGCCGCGCACCGACAGGCTACGATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
NA
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102404=DUF2464=PU(7.9=54.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGCGGATCGGAGCA
R:
CACCTCAGGCATTGTGGACTG
Band lengths:
247-433
Functional annotations
There are 0 annotated functions for this event