GgaEX0000965 @ galGal4
Exon Skipping
Gene
ENSGALG00000000950 | MVB12B
Description
multivesicular body subunit 12B [Source:RefSeq peptide;Acc:NP_001025848]
Coordinates
chr17:9963553-9967245:+
Coord C1 exon
chr17:9963553-9963609
Coord A exon
chr17:9966679-9966864
Coord C2 exon
chr17:9967161-9967245
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTTATTTTTAAGATC
3' ss Score
9.19
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
AGCTGCTTCTGCCTGCGCCGAGGGAGCCGCGAGCCGCCGCCCGCCGCGCGGGCAACA
Seq A exon
ATCAAAGGTGTGATAGCAAAGAAACTAAACTTTGCAGGCGCCCGAGGGGGAGTTGAAATGTAACTCATGGTCTGCATCAGCCCGAAGCTCTGCTGACCTGTTCCAAGTTCAGAAAACATTTACTGAGCACGCAGGCCGGTTCTTGCTGCTCTGCACCAGCTCCAGCTGCATCCCAGTGCCCTGCGG
Seq C2 exon
CACCGTGTTGGTTCAGACTGGGCACTGTGAAGTGTAAACCCTGGTCCTGCTGGCACCAGCACTCACCTCTGCCTTTTTAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950-'2-3,'2-2,7-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]