GgaINT1018490 @ galGal4
Intron Retention
Gene
ENSGALG00000000950 | MVB12B
Description
multivesicular body subunit 12B [Source:RefSeq peptide;Acc:NP_001025848]
Coordinates
chr17:9966679-9967245:+
Coord C1 exon
chr17:9966679-9966864
Coord A exon
chr17:9966865-9967160
Coord C2 exon
chr17:9967161-9967245
Length
296 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
CTCTTTTTTGTTGCCCGCAGCAC
3' ss Score
11.09
Exon sequences
Seq C1 exon
ATCAAAGGTGTGATAGCAAAGAAACTAAACTTTGCAGGCGCCCGAGGGGGAGTTGAAATGTAACTCATGGTCTGCATCAGCCCGAAGCTCTGCTGACCTGTTCCAAGTTCAGAAAACATTTACTGAGCACGCAGGCCGGTTCTTGCTGCTCTGCACCAGCTCCAGCTGCATCCCAGTGCCCTGCGG
Seq A exon
GTGAGAGCTGCCCCGCCGTGCCACACAGCTTGGGGTCAGCTGGGTGCCATCCTGCAGGGTGCCATGCTGGGTGGTGGTGCCGCCAGCAGGAGGCTTTGTGTGCGCTCTGACCGAGTGTGTGTCGGTGCGTGTGCTGGGTGCTCACCCAGGTGCTGGGATAGAGCTCTGGTGCTGGTGGTCCTTCTACCGCGCGCTTGCTCCCTCTGCTTTGTAGGCTTTAGGCAGTCTGGTTTGGTTGTTTGTGTGGCATTGTTATTTACATAGGCCCCAGATTTGCTCTTTTTTGTTGCCCGCAG
Seq C2 exon
CACCGTGTTGGTTCAGACTGGGCACTGTGAAGTGTAAACCCTGGTCCTGCTGGCACCAGCACTCACCTCTGCCTTTTTAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950:ENSGALT00000001402:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGGTGTGATAGCAAAGAAACT
R:
TGCTTCTAAAAAGGCAGAGGTGA
Band lengths:
270-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]