GgaALTD1014942-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000950 | MVB12B
Description
multivesicular body subunit 12B [Source:RefSeq peptide;Acc:NP_001025848]
Coordinates
chr17:9963134-9968369:+
Coord C1 exon
chr17:9963134-9963234
Coord A exon
NA
Coord C2 exon
chr17:9968247-9968369
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
ACTCTGCTGCTTTCTTTCAGGAT
3' ss Score
11.85
Exon sequences
Seq C1 exon
ACCCAAGCGGAAGTCAACGGGCGAATCGTTCTCTTTAGAAAGTTTATTTTTTGGCACCGCGGAACTCCCGGCTCCCCGGACCGGCGGGGCACGGCCTCCAG
Seq A exon
NA
Seq C2 exon
GATCAGTCCACAATGCCTGAGGTGCGAGATCTCTCCGACGCCTTGCCTGATGTGCCAATGGATCCCATCACAGGGGTTGGCGTGGTTGCATCCCGGAGCCGCGCACCGACAGGCTACGATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950-0-6,1-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102404=DUF2464=PU(21.7=54.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCGGAAGTCAACGGG
R:
TACATCGTAGCCTGTCGGTGC
Band lengths:
222-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]