GgaEX0001310 @ galGal3
Exon Skipping
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9636695-9639962:-
Coord C1 exon
chr17:9639745-9639962
Coord A exon
chr17:9638853-9639004
Coord C2 exon
chr17:9636695-9636767
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCTCTTCCTGTTAGATA
3' ss Score
9.56
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AGATCTATCCGATCTTTTGCTAACGATGACCGCCATGTTATGGTGAAACATTCAACCATTTATCCATCTCCAGAAGAACTTGAAGCTGTCCAGAACATGGTATCAACAGTAGAATGTGCCCTTAAACATGTGTCTGACTGGATGGATGAAAAGAACAAGTCTGTAAAATGTGAGGGTGATGTGGAAGCAAAAGAGGAAGCTGCAGAAAGCAATGCCAA
Seq A exon
ATAATACTTCTCCATTGAACTTCTTGGGACTCTAATCTGGTTACATCCGTAACGTAACCTGCACTAGAGATGTAGTCAAAGGACTCTTCCAATTTCCTTTCCTATGGTGTGTGGAATATTAAGAAAGTCTGCAGCTACATGGGCTTTGCCCA
Seq C2 exon
GGGGATGTGCCGCTAGTTGGTGCCACAGTATGTGAGATGAGTCGTGGCAGTAGCTGGTTTTGAACTGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-'1-5,'1-4,5-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=1.000 C2=0.800
Domain overlap (PFAM):
C1:
PF142301=DUF4333=WD(100=60.3)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTAACGATGACCGCCAT
R:
AGCTACTGCCACGACTCATCT
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]