GgaEX0001310 @ galGal4
Exon Skipping
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8925487-8928004:-
Coord C1 exon
chr17:8927904-8928004
Coord A exon
chr17:8927645-8927796
Coord C2 exon
chr17:8925487-8925559
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCTCTTCCTGTTAGATA
3' ss Score
9.56
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ACAACTGGCTTGTTATTTTAGGTTTCTTGGTGTATAACTTTTTAACTTGGGCACTTAGAACCAGAACTTGGGCTTCCTGTCTCATATGCTCTCCAGCTCTG
Seq A exon
ATAATACTTCTCCATTGAACTTCTTGGGACTCTAATCTGGTTACATCCGTAACGTAACCTGCACTAGAGATGTAGTCAAAGGACTCTTCCAATTTCCTTTCCTATGGTGTGTGGAATATTAAGAAAGTCTGCAGCTACATGGGCTTTGCCCA
Seq C2 exon
GGGGATGTGCCGCTAGTTGGTGCCACAGTATGTGAGATGAGTCGTGGCAGTAGCTGGTTTTGAACTGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-'21-10,'21-9,22-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000001802fB133
Main Skipping Isoform:
ENSGALT00000001802fB132
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGGCTTGTTATTTTAGGTT
R:
GACAGTTCAAAACCAGCTACTGC
Band lengths:
170-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]