GgaEX0001333 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr13:8503798-8508178:+
Coord C1 exon
chr13:8503798-8506093
Coord A exon
chr13:8506683-8506778
Coord C2 exon
chr13:8507945-8508178
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCTCGTTTTCTCAGAAT
3' ss Score
10.54
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CGCAGGGCCTCTTCAGCTGCCCGCTGTGCAGCGCCCTGGAAGCCCCTCCTACGAAGCTGCAGCCCAACATCCAGCTCCGCAGCATAGTGCAGAAGTTTTTGGACACCAGTGAGCAAAGCGCCGCTCTTGAAGAGGAACTAAGACGTCAAGTGGAATGTGAAGAGAAGGGAGAAAGTTCATATTTTCATGATGAGGAGATCCTGTGTGATTTCTGCCTTGAGAACCCTCAGCCAGCGGTGAAGACGTGCATGAACTGCGAGACCTCCCTGTGCCAGGCCCACCTGGGCAAGCACAGCACAAAGGCTTTCCTGACAAGCCACGTCCTGGTGGAGCCCTGTGACGCTCGTGTTTTGGCAGAAAGGAGATGCTCCCAGCACGGCAAGCTGCTGGAATGCTACTGTGTGACAGACTCGGTCTGTGTCTGCATGCTGTGCTGTGCCACCAGCTCCCACAGGAGCCATGAAATCATTAGTGTGGAAGAGGCTTTTAGCCAAGCACAG
Seq A exon
AATGATTTTCCTAAAACTCTGCGAACACTGAAAAAACACAAAGCTGCAGTGAATAAAAGCTTGGAAAATCTGCTGACACAACAGGAGAAGATAAAG
Seq C2 exon
GCATTGGAAAGATTGCACAGGAATCATCTGGAGAACTCCTTCAACGCGATTTGTGAGCACCTGGAAAGAAGAAAAACAAGGATCCTGGAAGCCATCAGTGACATTGAGGGGAAACAGCTTTCTCAGATTCAGCCGTGGATAAAAGAACACAAAGAGATGAAGGATGCTGTCAGCAGTGATGTACGGGAGTTGGAGGCTCTGAGGGATCAGAAGGATCCAGTACTCTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001206_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=39.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGAATGCTACTGTGT
R:
GCTCACAAATCGCGTTGAAGG
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event