GgaINT0018875 @ galGal3
Intron Retention
Description
NA
Coordinates
chr13:8505782-8506778:+
Coord C1 exon
chr13:8505782-8506093
Coord A exon
chr13:8506094-8506682
Coord C2 exon
chr13:8506683-8506778
Length
589 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTCCCTCTCGTTTTCTCAGAAT
3' ss Score
10.54
Exon sequences
Seq C1 exon
GATGAGGAGATCCTGTGTGATTTCTGCCTTGAGAACCCTCAGCCAGCGGTGAAGACGTGCATGAACTGCGAGACCTCCCTGTGCCAGGCCCACCTGGGCAAGCACAGCACAAAGGCTTTCCTGACAAGCCACGTCCTGGTGGAGCCCTGTGACGCTCGTGTTTTGGCAGAAAGGAGATGCTCCCAGCACGGCAAGCTGCTGGAATGCTACTGTGTGACAGACTCGGTCTGTGTCTGCATGCTGTGCTGTGCCACCAGCTCCCACAGGAGCCATGAAATCATTAGTGTGGAAGAGGCTTTTAGCCAAGCACAG
Seq A exon
GTAAGAGGCTGCCAGGACAGCTGCCTGGACTGGGACTGCTCGAGGGAAAACCTGGGGCTCTGGGATATGGAGAGGTGCCCGCAGCGTGAGGCCAGAACATCTCCTGGGCTTCAGGTGTGCAGGCTCCCACCTTGGGATACGTGGCTTTGGGTGTGGGCTTTGCCTCAGCCTGTCTCTGGGGCTGCCCCTTGGGCTGTAAAACAATCTCATGAGCAGTCAGTGGGACCGAGTGCTTGTGGCTTTGCTTTTAGTCCTCGATGCATCTTCGAACAGGAGCATCAGCCTCAGCTGTGTTTGTGCAATGAAAATTAATGGCAGTGTAACAGAAAGGAAGCTGCCACCAATAAAAAGTAGCTTTCCACGTGGCTGTTGTGCATGGACAGTTGTTGTTTTGAAAGAATCTTCCCCACATTCACAATCGTGAGTTCTGTTCAGGGGCAAAACCTTCCAGTAAAGCTTTTATGTGCTGATTTGTTGTGAGAGCAGACAGTGAACAAACTTTTGCCGGGTCTGACCTCACCCATCTCCCTAACATTGCCCATCTTGTGCCCTTATGTCTGTACCTCATACCTCCCTCTCGTTTTCTCAG
Seq C2 exon
AATGATTTTCCTAAAACTCTGCGAACACTGAAAAAACACAAAGCTGCAGTGAATAAAAGCTTGGAAAATCTGCTGACACAACAGGAGAAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001206:ENSGALT00000001825:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=39.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAAGACGTGCATGAACT
R:
TTCTCCTGTTGTGTCAGCAGA
Band lengths:
355-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]