MmuINT0165045 @ mm10
Intron Retention
Gene
ENSMUSG00000000275 | Trim25
Description
tripartite motif-containing 25 [Source:MGI Symbol;Acc:MGI:102749]
Coordinates
chr11:88999376-89004824:+
Coord C1 exon
chr11:88999376-89000082
Coord A exon
chr11:89000083-89004728
Coord C2 exon
chr11:89004729-89004824
Length
4646 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCTATGTGTTTTCTCTACAGTAC
3' ss Score
8.98
Exon sequences
Seq C1 exon
AGGGCGCCGCCCCTCCTGTTCAGTTTCGATTCCTTCCTCGCTGCTTCTTAAGTACCGCGCGGTAGGGTGCGCAGCTGTCCCTGCGCGTCACGTCGGGTGAGCCCACGAGCGCGATGGCGGAGCTGAATCCTCTGGCCGAGGAGCTGTCCTGCTCCGTCTGCCTGGAGCTCTTCAAGGAACCTGTCACCACTCCGTGCGGCCACAATTTCTGCATGTCATGCCTGGATGAGACGTGGGTCGTCCAGGGCCCGCCGTACCGATGCCCGCAATGTCGCAAAGTGTACCAGGTGCGCCCGCAGCTGCAAAAGAACACGGTAATGTGCGCGGTGGTGGAGCAGTTCCTGCAGGCCGAGCAGGCGCGGACCCCGGTGGACGACTGGACGCCTCCTGCCCGCTTCTCCGCCTCCAGCGCAGCCACCCAGGTGGCCTGCGACCACTGCCTGACGGAGATCGCAGTGAAGACGTGCCTCGTGTGCATGGCCTCTTTCTGCCAGGAGCACTTGAGGCCTCACTTCGACAGTCCGGCCTTCCAGGATCACCCCCTACAGTCGCCCATTCGTGACCTTCTGCGCCGCAAATGTACCCAGCACAACCGCCTTCGGGAATTGTTTTGTCCCGAGCATGGCGAGTGCATCTGCCATATCTGCTTGGTAGAGCACAAGACCTGCTCCCCTACGACCCTAAGTCAAGCCAGCGCCGACCTGGAG
Seq A exon
GTAGGGAGTGGCTGGTTGAGGGTATAGAGGACAGCTTGGATCAGCTGAATTGTGGAGAGGCCATCCTGGGTATCCCTGTAGTACAGTGGGTTGCTAGAGGAGATAGGCTTTGCTGGGCCAGAGATCCCATTCCTTCACAGACCTCATGGCCTTAGGCTCCGTGGGCCGCAGTCTGGGAGTTGGGCAGTAGGAAGCCATCCCCACAGACCAAACAAGTAGATTTTATATAGCCTCCCGCTCATCCATTATCGCCTGCCTTCTCCAGCCCTCTTAGTTCTATTTTACATAGAGCACAACGGAAGGCACAGGTAAGAGTGCCTGCCCCAAGTCTGTGTTTGTCCAGTGGAGTTCAGTAGTTTTGAATATTAACCAGGAACCCTGGGGGTTACCTCTCCAACCCCTTCAGATCCTGGCAGCACGAAAGGGCTGTGTCTGTTTAGTTCATTCCACAGCTCAGGGCTGTGTCTGTTTAGTTCAGGAAAACAGGCCCAGAGAAATTAGCTTAGCAGGAACCAGGCTGCTTTGAGTCACAGCTTCTGGTTTCCTTTTTCCCTGTAGACCACAGATCTGTTGAGTCCAGAGCATGGAGCAGTCTTGGAAGCTTGAGGTTAAGGGTAACAGAAGCCTCTGTTGAGGAGGGTGTGAATGGATAGTGAGTGTGAACACAGAGCCTCAGAAATCCCTGCTTGTGACTTTGGCACTGTGGTATAGCCCTTTTTTGGTTGTTTTTAAGACTGTCTCACTATGTAGTCTTAGCTGTTCTGGAGCTTGCTATATTGACCAGGCTGGCTTTGAACTCATGGAGACCTGCCTGCCTCTGCCTCCCAAGTGCTGAGACTAAACGCACGCGCTCAGTTGGTGTAGTCCATCTTGCTGTGTGAAAATTGAGCAGGGCCTGGCGTGGTGGCGCATGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTGAAGCTATATAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAAAAAGAAATTGAGCAGGAATTGGGCCTCTGGACCTGGGTCCGCCTTGCTAAAGACTGGAAGCGTGTGTCAGGGAGTCAGGGTTCCTAATGGCCTTGTGGGGTTGCAATGATTTTAGTGGCTTTAGAGGTCCCCCCCCCATTACAGACTCAAAGCAGTTGTTGCCTCTCTTCGGTACATTTGTCAAAGTGTGATCTGATCTCCTTTCTCTCTCAAACGTCTGAGAACTTGAGGCCTGTCCCAACATTGTGGAAGGAATTGGAAACCTGGGTGAGGTTGGCAAGCCTTGCTGTGTGGTGCCAAGATCTCAGCTCCGCTCCCTCCTCCTGCCACAGCCCTTCCCTGGCCTTGCCTGCCTGTCTGGGTCTTAGTCAGGTCCCTTAGAATGTCTTCCCTCTGATTCTTGGCACCTGTATCTACAGGTAACATCTTTAGAGTTCTCTTCAGTATACCCCATGTGGGTACGGGGTACGGATACCTCCAAGTCTAGCTGTTCTGGGAGAAAGTCTGCCCCGCCTTTGGTGCTTTTGTCTTTGCTACCACCAGAGCTAGCTGTTTGGCTTGGGGCAAGACCCTACAGATCTCTGGGTAGGTCAAGAGCCACCAGGGAAGTGCCGCAGAGGCAGGATCCGGTGTCAGGAGGCTTGGCACTTAAGAGGTCCCTCCCAGATTCAGTGCCAAGATCTTGGTTTAAATTGTGACCCCCAGCAGTAGCTTCCAGCTACAGAAGAATAAAATGGGGAACATGATGGTCTCCAGTTACAGTGAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAAGGCATGCTCCAGTTACAGTGAACCTTGGGTGAAGTGAAGCTGGTGTAGTGGCTCATGCCTGTAATTCCAGCCCTTGGGAGGCTTAGGCAGATAAATCATGAGTTTGAGGCCAGCTTGGACTACATCGTTTCAGGTCAGCTACAGGGTGAGACTCTTGTCTCAGAAAGACAACCACAAATAACCAGTGGCCAAGGAGGTGGCTTGGCTGGTAAAGGGACTTGTTACCAAGGCTCTGGCCTGAGTTTGATCTCTGGGACCAATGGTAAAAAGAGAACCAACTCCAGCAAGCTGGTCTTTGACTCGACAATCCGTATGCATGTGATCGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTACACACAACTAAATGAATGTAATAAAAGAAGCGAAAGTGGATAAGTCAACTCTCTGCAAGATTTCCATGTAAGTTACTACCTACCGGTTCTATTATTGGGCTTGGGCACCCTGGTCTGTGCTCTGGGGCAGCCCCAGGCAGGACAAAGTGTCCAGATTGGTCTCTGTCCCAGTCAAGTGGACTTGCCATCAATCCCTGTAGTAGTACCCTGCTGTATAAGTACATATTTACCAAGGCAGAAGTAAGTGGGGGCATGAGGGGCCTCCCCAGCCAGGAGTGAGCGGCCATTCCTGCTGACTTTTTAATCCCGATACCAGGATTCCTCCTGCCAACCTCCTGCCCATATGTTTTTCAACCCAGCTGCTGTTCTTCCTGTCTCAGTGCCAGACCCTGGCAAGCGTGCTCAGTCTTGAGTATCACGGCTACTAGTTTGGGGGTGCAGACTCAGGATTCCCCTCTCTCCCCCGTGGAGGACCCAGGTCCTTGGTCTGCCACAAGCTCTCCCAGGCTTCCCAGAGTTCTGTATCCTTGACCAGTCCTCAAGCTGCCTCTCTTTGATTTGGAGTGGGGTGCAGTGGACCCCCATCCACAATGAGGGGACTGTTATCTGTGTTTGCTTAATGGTGGATAACCTTTTTAGTGTGGAGGGCTCATAGTGCACTCAATTCTGGAATTGAGTCAGTTGCTAGCACCCGTATGTTTCTTCCAGCCCGGGAGGTAGTTCTGCCTGGATTTGCCCTTTGACCCAAATCTATCTCCGCCACTGTTGGAGACCTGAGGTGGGGGAAGGGTTGTGTCAAAGAGATTGAGCCAAACATCACTGATCTGGGCTTTCTGGCTACAGTTTGCGCAGCCTTGATCTCTGTATCCGGCCCTTAACGAGTGCCAGTGGATGGTGCAAATCCAGCCCCAAGGTTAGGTCCAGCTCTGATGGAGTAGAGGAAGCAGGAAAGTAGAAGAGAGAGCTACTGTGTGTTGAGCTGCTTCATTAGGGGAAGGAAATGCTATTATAATATTTTTTTTTTTGTAGAAATTCCTAGCACACACAGTTTGGTCACTTGTTTATAAATTTAGTACCATTGTTAGTAACCTGTGCCAGTTACTAACAATGTGGTCTTGGCTGAGTCGCCTGATTCCTCGACATCCTTCTGTCGTGTCTGAGTGATGTCTACTTTTCCGTGTTGCTCTAGAAGTAGTAGGTGTCAGGTGCTGGCAGAGTGTGTGAGCCCTTCATGACAGCCCTCATGACTGATGGTGGAGTGTCCCTTCTCATCTCTGTATGGCACCGATCTATCTTAGCAGGGACATAGGAAACTTGCTCCTGGAGGTGGCTGAGAGCCAGACAGTTTTGAATCAGTGTAGTTCTTTCAAGCCCCAGTGGCCAGCTTACCCTGATTCTCAGCCCTCAGTGGCCCTGGCCTGGGGTGGCCAAGTACAGTTGTGCATTTGTCCCTGCCTTGCTGGAGGTGACAAAGCCTCACCCAGCTTCCTTCCCCCTCCTGGAAGTCTCCCCTGGGGAGGACAGCCTTGGGTGTTGGGCTCCTTCGTTGGGTCCCCTTCTGGAAATGCCAAGGCTTTCTTAGTTCTCCAGCACCTTTGATATTTTGTCTACTTTCAAGGCTGTTTGCTGTGGTAGGGTGAGCGACCTCACCCTGCCGTTACAGAATCAGCTGTTCCAGATTGTTACGTCTCTGTGAGCTGGGCCACTTGCTGTCCCCCTTGCTTGGATTTCATGAGCTGTAAAATGAGTAGGAGAAAAAGAAATGTATTAGAATAGAAGCTGACATTTAGTATTGACAGATCCTCCAGGCAGGGCTCTGAGCACAGTCCTTGGTTAGTCTTCCTGATTGTCCCTGTAGCTGCTTAACCAAACCAGTGGTTTCTGTTCATGGCCAAAGAAAGAGACAGAAGACATATGGCTGGGAACAGGCTTTCAAACAAACAGGGTCATTTTGGTTCCAAGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTCTCTCTATATAGCTTCGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCAAAGTGCTAGGATTAAAGGTGTGGGCCACCACGCCCAGCTGGTTCCAAGTCTTGTATTGTCTTCCTGAAGGGGCAGCGGAGTTAGGGAGGGAATGGTCCTCAATGTGGGGGAGGGGCTAGGACATAGGCTAAGGAGGGGCTCTCTCACCCTATGTGTTTTCTCTACAG
Seq C2 exon
TACAAACTGAGGAATAAACTCACTATCATGCACAGCCACATCAATGGGGCAACCAAAGCATTGGAGGATGTGAGATCCAAGCAACAGTGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000275:ENSMUST00000107896:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=20.7),PF0064319=zf-B_box=WD(100=19.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types