RnoINT0155755 @ rn6
Intron Retention
Gene
ENSRNOG00000002341 | Trim25
Description
tripartite motif-containing 25 [Source:RGD Symbol;Acc:1594396]
Coordinates
chr10:76343847-76348712:+
Coord C1 exon
chr10:76343847-76344501
Coord A exon
chr10:76344502-76348616
Coord C2 exon
chr10:76348617-76348712
Length
4115 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGTGTGTTTTCCTTTACAGAAC
3' ss Score
13.24
Exon sequences
Seq C1 exon
CACCGCGCGGTGGTGTGTGCAGCTGTCCGTGCGCGTCCCGTCGGGTGCCCCCAGGAGAGCGATGGCCGAGCTGTTTCCTCTGGCCGAGGAGCTGTCGTGCTCCATCTGCCTGGAGCCCTTCAAGGAGCCCGTCACCACCCCGTGCGGCCACAATTTCTGCAGGTCATGCCTAAATGAGACGTGGGTCGTCCAGGGCCCGCCGTACCGGTGCCCGCAGTGTCGCACCGTGTACCAGGTGCGCCCGCAGCTGCACAAGAACACGGTGCTGTGCGCAGTGGTCGAGCAGTTTCTTCAGGCCGAGCAGGCGCGGACCCCCGTGGACGACTGGATCCCGCCTACCCGCTCCGCCGCATCCAGCTCAGACACCCAGGTGTCCTGCGACCACTGCCTGAAGGAGGTCGCGGTGAAGACGTGCCTCGTGTGCATGGCCTCTTTCTGCCAGGAGCACTTGCGGCCTCACATCGACAGTCCGGCCTTCCAGGACCACCCCCTGCAGCCACCCGTCCGTGACCTGCTGCGCCGCAAATGTTCCAGGCACAACCGCCTTCGCGAAATGTTTTGTCCTGAGCACGGAGAGTGCATCTGCCATATCTGCCTGGTAGAGCACAAGACCTGCTCCCCTACGATCCTAAGCCAGGCCAGCGCCGACCTGGAG
Seq A exon
GTAGGGAATGGCTGGTTGAGGGTCTAGAGGACAGCCTGGGCCAGCTGAATTGTGGAGAGAGCCCATCCTGGGTATCTCTGTAGTACAGTGGGTTGCCGGGAAGAGATAGGCTTTGCTGGGCCAGAGATCCTATATCCCACCCCTTCCTTCACAAGAACTCATGGCCTTAGGCTCTGTGAGCCGCTATCTGTGAGTTGGGCCGTAAGGGGCCATCTCCACAGACCAAACAGAAAGCAAGTAGATTATATATAGCCTCCCCACCCATCCGTTATTGTCTGCCTTCCCCAGCCCTCTCATGTCTATTTTACATAGCAGACAACTGTAGGCACAAGAAAGAGTGCCTGTCTCAAGCCTGTGTTTGTCCAGTGGAGTTCAATAGTTTTGAATATTAACTAAGACGAACCCTGGGGGTTACCTCTCCACCCACTCCAGGTCCTGGCAGCATGTAATAACTGTGTGTGCTCAGTTCATCCCACAGTTCAGGAAAACAGGCCCAGAGAAGTTAGCTTAGCAGGAACCAGACTGCTTTGACTCACAGTTTCTAGTTTCCTTTTCCCCTGTAGACCAGATCTGTTGAGTCCACGTTTGTTGAGCCCAGAGCATGGAGCTCCAGGAGGCTCGAGGTTATGCGCAACAGAAGCCTCTGTTGACTGGAGAATTTTCATGGACAGGAAGTGTGAACAGAGAGTCTCAAGAATTCCTGCTTGTGACCTACAGGGAGAGAGCCTTTGACACCGTGGTGTAGCCCATCTTGATTTTTTGTTTGTTTGTTTGGTTGGTTTTTTTGACAGTCCTTTGTAGTCCTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTGGCTTTGAACTCATCGAGACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGCGTGGGCCACCACCACCACTCAGTTGGTGTAGTCCATCTTGCTGTGTGAAATTGAGCAGGAATTTGGCCTCTGGACCTGGGTTCAACTTGATAAAGACTGGAGGTGGAGCGTGTGTGTTAGGGAGTCAGGGTTCCTAATGGCTTTGTGAGGGGTTGCCATGATTTTAGTGGATCTAGAGGTCCCCGTCTTCCCCTTATGGTGCCTCTCCTTGGTCCATCTGTCAAAGCATGATCTGATCTCACCTCTCTTAAACATCTGGGGGAGTTGAGACCTGTCCCAATGTCGTGGAAGGAATCAGAAGCTGGGTGAGGTTGGTAAGCTTGGCGATGGTGCCAGGACCAGAATTCCAGCTCTGCTCCCTCTTGCCACAGCCCTTCCCTGGCTTTGCCTGCCTCTCTGGGTCTTAGTCAGGTTCCTCAGGACTTTTTCCCCCCCTGAGTCTTGGATCTTTTGAGTTCACCTCTTCAGTATGCTTTATATAGGTATGAGTACCTCCAAGCCTAGCTGTCCTGGGAGAGAGTCTGCCCTGCATTTAGAGCCTTTGCTACCACAGAGCTAGCTGTTTGGCTCGAGACGAGTCCCTGCAGATCTCTGGGTAGGTTGAGAGCCACTTGGGAAGGGCTGCAGGGGCAGGATCCAGTGTCAGGAGGCCTGTCACTTAGGAGACTCCTCTCAGATTCAGTGCCAAGGTCTGGGGTTAAATCCTGACCCCACCTTGTAGCATCCAACTACAAATGGTAAAATGGGGGACGAGGACGGTCTCGGGCTATAGCGAACCTTGGGCGAAGCTGGTGTCGTGCCTATAATTCCAGCACTTGGAAGGCTTAGGCAGATAGATCATCGTGAGTTTGAGGCCAGCTTGGAACTACATAGTTTCAGGTCAGCTACAGGGTGAGACTCTTGTCTCACAAAGACAACAACAAAAATAGCCAGTGGTCAGCGAGATGGCTCGACTGGTAAAGGGACTTGTTACCAAGGCTCTGGCCTGAGTTTGATCTCTGGGACCTGTGTGGTAGAAAGAGAACCAACTCCAGCAAGCTGATCTTTGACTTGACACCTATATGCACACAGATAAATGAATGTAATAAAATCAAAGGAAGAAAAAGGGGACAAGGCAGTTTTCTGCAAAATCTCCATATATTTACCAAGGCAGACATTGGGGGCATGAGGAGCCTCCCCAGCCTGTCCTGAGCCTCTGCTCCCTTTCAGCCTTTTTGTCCAGAGCTGGAGTGAGCGGCCATTCCTGCTGCTGCTTTTTAATCCTGATAGCAGAATTCCTCCTGCCAGCCTTGTGCCCGTGTCTTTTTCAACCCAGCTGTGGCTCTTGTCTCAGTGCCAGACCCTAGCAAGCACTGCTCAGTCTTGAGCATTGTGGCTGCTGGTTTGGGGGGGTGCAGACTCAGGATTCCACTCTCTCCCATGTGGAAGACCCAGATCCTTGGTCTGCAACAAGCTCTCCCAAACCCCAAAGTCCTCTGTCCTTGGTCAGTGGTCTGTCGTTGCCGCCTAAGTCCTTGAGCTGCCTCTTTTTGATTAGGAGTAGGTCAGAGTAGGTTCCCTCCCACCCCCCATCCACTAGGAGGGGACTTTTATCTGTGTTTACTTAATGGTGGATTACTCTTTCAGCGTGGAGGGCTCCTCCTGCAGTTCTGGAATGGAGTCAGTTGCTAGTACCTGTGTGTTCTCAAGTCTCTTCTAGCCCAGGGAGGCAGGGTTTGCCCTTTGACCCAAATCTGTCTCAGCCTCTGTTGGAGAGAGGCCTGGGGCAGGGGAAGGGTTGTGTCACAGAGGTTGAGCCAAAACAAACATCACTGACCTGGGCTTTCTGGCTACAGTTAGTTTGTGCAGCCTTGATCTTTGTGTCCTGCCCTTACGTGTGCTAGTGGGTGGTTCAAATCCAGCCCCAAGGTTAGGTCCAGCTCTAATGGAGTAGAGGAATCAGGAAAGTAGAAAAGAGGGCTACTGTGTGTTGAGCTACTTGATTAGGGAAAGGAAATATTATCATTATTATTATTGTTGTTGTTAATTAATTTGTAGAAATTCCTAGCATACACAGTTTGGTCATTTGTTTATAAGTTTAGTAGAACCTAACCTTTGCCAGTTACTAACAATGTGGTCTTGAGTGAATCATGATTCTGTGATGTTTTCTGTAAAGTCTGAGTGATGTCTGCTTCTCCGAGTTGCTCTAAAAGTTAATAGGTGTGAGGTGCTAGAAAAGCGTGTGAGCACTTCATAGCAGCCTTCCTGACTGGTGGTGGAGTGTTCTCTCTCATCTCGGCACGCCGTTCTATCTTAGCAGGGACATAGAAGACTGTCGCCTCTGGAAAGTGGCTAAGAGCCAGACAGTTTGAATCAGCGTAGCTCTTTCAAGCCCCAGTGGCCAGCCTACCCTGATTCTCGGCCCTCCGTGGCTCTGGCCTGGAGTGGCCAAGTACAGCTGAGCATTTGTCCCTGCCTTGCTGGAGGTGACAAAGCCTCACCTAGCTTCCGTCCACCTTTGGAAGTCACCTCTGGGGAGGACAGCGTTGGGTGCTGAGCTCTTTCGCTGGGTTCCCTTCTCCTGGAAAATCCACTGTTTGGTTAGCTCTCCAGCGCCTTTGATATTTTGTCTATTTTCAAGGCTGTTTGCTGTGGTAGGGTGGGGTCACCGTTACCAAAGATCGCTGTGTCTCTGTGATCTTGGCCACTTGCTATCCCTCTTGCTTGGATTTCATGAGCTGTAAAATGAGTAGTGGGAGAAGAAATGTGTTATAATAGAAGCTGAACAGATCCAGGCAGGGCTCTGAGCACGGTCCTTGGTTAGTCTTCCTTTTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTAACCACTGAGCTAAATCCCCAGCCCCGGTTAGTCTTCCTGATTGCCCCTGTAGCCACCTACCCAGTGGTATCTGTTCATGGCCAAGGAAGTAGGCAGAAGACACATGGCTGGGTCACAGGATTTCAGACACCGTCATTTTGGTTCCAAGTCTTAACGTTTCTGTATTGTCTTCCTAAAGGGATAGCGGGAAGCTTCAATTACAAGGAGCATACAGCGTAGGCAGAAGGGGCAGCGGGATGGAGGGAGGGAATGGTCCTCAGTGTAGGGGAACTAAGACACTAGGGTAAAGAGGGGCTCTCTTGCCCTGTGTGTTTTCCTTTACAG
Seq C2 exon
AACAAACTGAGGCAAAAACTCACCATCATGTACAGCCACATCAATGGAGCGAGCAAAGCACTGGAGGATGTGAAATCCAAGCAGCAGAATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002341:ENSRNOT00000055674:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=WD(100=22.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]