BtaINT0152624 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009948 | TRIM25
Description
Bos taurus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001100336]
Coordinates
chr19:7954400-7959817:-
Coord C1 exon
chr19:7959190-7959817
Coord A exon
chr19:7954496-7959189
Coord C2 exon
chr19:7954400-7954495
Length
4694 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCAGTTCGTTTTCTCTGCAGAAC
3' ss Score
9.53
Exon sequences
Seq C1 exon
ACGTCCCGTCGGGCGCCCACGACACACCATGGCGGAGCTGTGCCCGCTGGCCGAGGAGCTGTCGTGCTCCATCTGCCTGGAGCCCTTCAAGGGCCCGGTCACCACGCCGTGCGGCCACAACTTCTGCGGCGCGTGCCTGGACGAGACGTGGGCCGTCCAGGGCGCGCCGTACCTCTGCCCGCAATGCCGCACCGGCTTTGCCGCGCGGCCGCAGCTGCGCAAGAACACGGTGCTGTGCGCGGTGGTGGAGCAGTTCCTGCAGGCCGAGCAGGCCCGGCCCGCGCTGGCCGCCGACGACTGGACGCCGCCCACCCGTGCCGCCGCCCCCAGCGCGGCCGGCCAGGTGGCCTGCGACCACTGCCTGCAGGCCACCGCCGTCAAGACGTGCCTGGTGTGCATGGCCTCCTTCTGCCAGGAGCACCTGCGGCCGCACCTGGACAGCCCCGCCTTCCAGGACCACCCGCTGCAGCCGCCTGTCCGCGACCTGATGCGCCGCAAGTGCGCCCGGCACAACCGCCTGCGGGACTTCTTCTGCCCCCAGCACAGCGAGTGTATCTGCCACGTCTGCGTGGTGGACCACAAGACCTGCTCCCCTGCGCCCCTCAACGAGGCCAGCACCGACCTGGAG
Seq A exon
GTAGGGGGCGGCGGGCGGCGGCGCCGAGAGGCAGCCTGGGCCGGCTGGGTGGCGCACAGGGCCCCGCTGTGGGCAGTGTGGCCGACCAGGCGGATTCCCGTGGGGGCGGTGGAGGGGCACCCTCAGGCCTTGCTGTGCCTGAGATGGGGGCAGGGGCACAGCNNNNNNNNNNNNNNNNNAGAATTCCATGGACAGAGTAGCCTGGCGGGCCACAGTCCCTGATGTCTCAAAGAGTGGCACACGACTGAGTGACTACACTTTCACTTTAGCAGTGGTCTGACATGTTTAGTAGAGGGTTTTGAACATCAAATATGAGGGCTAGAGGTTACCTCGGTTCTCTTAAGTTCCCCTAGCTCCCAGGTGGTGGGTATAATGAGTTGTTTACGGCTGAGGAAATAGGAAATGGACATTCAGAGAAGTTCATTTCACTTGAGTTAACCCAAGTGGCCAAGTGGTCATTGGCCAGCTGGTCTGACACCATTGTTGCTGTTTCTTCTGGTGGATGAGCCTCAAAGCCAAGTCCTGGAATTCAGAGCACAGGACATTTCTGAGGTCATGTGAGATAAAGTCTTTGTGAGCCAGAGACTTCTGGTGACCAGGGAGGACCAACCATTATGAGGGGGAGGGTGGGCAGGGTCCCCGGAAGCCCTGGACAGGAGGCCCAGCCGCACGCTTGCTGTGCCCTTTCTCCTGCCTGAGCCACTTTAAATCACGGGGCTGGTCCTCATCAGCAATGTGAGGAGGGGGATCAGGGCCCTTCTTGGTCTGAGATGGTTTCAGTGGTTGCCTGGGGTTGGTCCTCATCAGCAGTGTGAGGAGGGGGATCAGGTGGATTCCTCAGGGCCCTTCTTGGTCTGAGATGGTTTCAGTGGTTCGAGGACCCTGATGTCCCGTCTGGAATGGAGGCAGAGGCTGAGCAGGCGTAGTCCCACTCCGTTTCCTTGCTTCAGTCAAACTTCAGGGTCAGGCCTGGGTTCTTTTCTCTCTCCCAGGCTCTCAGGGAAAACCGGGGCTGTCCTTGTGCTGTCTAAAGAGATGTGAAGCCTGGGGACCTTTGCAGTGGCTCCACGGCTCGGGGGCAGGTGCTGCTCTGGCCTGGGCAGGACCCTCCCTGCCTCGTCTGCCTGTCCAGGCTGAGCTGGGTTCCTGCGGCCTGCTTCCCTGAGTCCCTCAGGCCTTGCCTGACGTTGACTTGGGAGGTACAACTGTCTCAGGCCCAGCCCTCTTGGGTCTCCACCTGTTATAGGAAAGAACCTGCCTGGCCTTCAGAGCCTGGAGGCCTGCTCTGCGTACATCAGCTGTGGTTCAGGGCAAGTCATTGCATTTCTCTTGAGGGTCAGCTTCTTCATCCCTAAAATGGAATTAATAGCATTCCCTCTGCACATCCAAGAGTGGCCAGGAGGCTCCACGGGGCTGAGCTGTTTGGGAAGTTCTTCTTAGGCAGGCCCCAGGGCCCAGCTGGTTGACTCGGACTCTGACCGGAGCTGAATGTTGAGACCTGGGTTTGAATTCTGGCTCTACTTCCTGGCTGGGAACCCATCAAAGGGCCCAATAATGATGCCTATCTGAGGAGGTGGTTGGGAGGATTAATGAGGTGATCCATAAATGGCGGGTTTTGTTTATTTGTTTTAAACACAGCTGTCAATCCGCCTTCAGTGTAGGAGACTCAGGTTCAATCCCGGGGTCGGGAAGATCCCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCAAGGACAGAGGAGCCTGGCAAACTGCAGTCCATGGGGTTGCAAAGAATCAGACACGACTGAGCAACTAACACTTCACTTCTTAGCTTTTAGGCTGTGTATTTTTTTTTTTTTTTTTTTCTTTTCAGTTGACAGAGATCAGAGTTGCTTTTTTAAAAAAAATAGTTATTTTAAGTTTTGGCTCTGACAGTCTTAGTTGCAGCACACAGCCTCTCTAGTTGTGGTGCACGGGATTAGTTGCTCCTTGGCATATGGGATCTTAGTTCCCTGAGCAGGGATTGAACCTGTGTCTCTTGCATTGGAAGGTGGATTCTTAGCCACTGGACCACCAGGGAATTCCCCATGCATGGCATTTTTATAGCTCGCTAGCAGCTCCTGCTAACATTTCTGTTACTCAGAAATTCCCCGAGGAGAGTTTGCCGCATGGAGGGTGTTAGACTGCCCAGATTTTCTTCTTCTCAAGACGTGTGGGCCTGAGGACTTGGGTGGCCTAAATCTGCTCAGAAGGCCTGCTAGCAGTTCTTATCCAGGAGGCAGAAGGCAGGGAGGGGCAGAAGGACCCTGGTCTGGTCTGGAGCCACAGCTTCCACTCGACCTCCAGGGCCTGGAGCTGAAATCTGTGCCCAGATTATCTGTATGCCATACACACTCGGCTTTTTAATCCTTTTAACAAGCCTTGCCTGCCCTCCATCTCTTGGCCTGCTGCGTCCTTTAACCCGGCGGCCCCCCACCTTTTTGGCAGGCAGCAGGAAATGGTTTCATGAAAGACAGGGAGAGGTGGTTCAGGCAGTGTGGGGAGTGGCAGATGAAGCCTCGCTTGTTCGCCTACTGCTCACCTCCTGCTCTGCGGCCTGGTTCGTGGCAGGCCTTGGACCAGTACCGGCCTACAGCCCAGGGTTGGGAACTCCTGCTTTAACCCGTCTCCTTTCCCAGCCCTGCTGCTGGTCAGTACTGGCTGCAGAGCCAGCCCAGCTGGGTTTGATCACTGGTGTAAGGTGGACTCAGGACTTTGGTGCCTACTTGGAGGACCGAAGTCCCCAGCCTGTAAAGGGATGCTCAGAACTTTGAAATGTTCCCTGTCCTTGATTGGCTGCTCTCAAAGGCCTTGGGTGGCTTTCCTTTGGTCTATAGCCATGTGGGCCCCTGTGTACCAACAGGGACTGTTGCATGCCTTTGATCAATATGTGTAAAATCTTTCAAGATATGGTGAGGGACAGGGAGGCCTGATGTGTTGCAGTCCATGGGGTTGTAAAGAGTCAGACATGACTGGGAGACTGAACAGCTACAAGAATGACCACTGAGAGTGGGTCTTGGAAACAGTTGGCAGCCCCCAGGAGTCCTGAGGTCTCTTCCAGATCTGAGACCCGTGAGGCTGGATGTGCCCAGGGCTGGCCTTCTGCCTTTGGCCGCAGTTTATCTTGGCCGCTGCTAGAGGCTGGGTCAGAGGTTATTGTCACAGAAGTCACATCTGAAACACCATGAGTGACTCGGGCTTTCGAGGTTGAGTTGGTGTGGCCTTGGTTTGTGCTTCCAGCCTTTCCATGTGACTGTCACTGGTTATTCAAATCCAGGGTGAAGGTCAGTGACCTGGGAGAGCCAGAGGACAGGAAGGGAAGGCCAGAGTATTGTTGAGCCAGCTACTTAAGGGACGTGCATTTTTTTCCCCTAGAAATTTCCTGTGTGCTTAGTTTGGACATAAGTCTGTTATTGTAATACCAGCATCTTGTAACACTAGTTAATAGTGATGTGGCCTAGGTAAGCCCCTTAATTATTCTGCTTCAGCGACGTCATCTGTAAAGGGCGGATAATCCCCTACCTCCTAGTGTTGTTTTAGCTTTACGAAGTTAATATGTGGAAAGTACTAGAACAGTGTCTGACTTGGAGTAAGTTCATGACCAACACCAGCTGCCGTTATTACGGTGGAGGTGGTGGTGATTTTCCTACCCATTTCTACACTGCAGCATTTTGCCTGAGTTGGGTGCAAGTCGGCTGGTGATTATGAAAATTTACGAAAATACTTGGGGGCTTCAGGTGGCATTAGCTGCCTTGGTGCATCGGAACGTGACCTGGGGCCTAGCGATTCTGAATCACCCTAGTTCAGTTTCAGGGACTGAGCTGGTTTGCCATTGGTTCATCCTTATTCCAGGGTGTAGTCCTTGGAGGGCTCGGTCTGTGGGGCTTATCCAGGTGAGCCGTGGACTTTGGTTTTTGTCTCCCTGCCTCTCTAAGGCGCACAGAGGCTCTCCCAGCTGTGTTCCCGAACTGGCAGATGGCCCTGGGAGAACCCCAGATGCCAGGCTTATCTCTTTGGGTTTCCTTCTCCTGAACTGTGTGGTCCTCCCTTTCTTTGTTAGCCCCCCACTGGTTTTCAGTAGGTCCCTCCTCCCCCAGTATTTTGTCTGCTTGCTGGTTGTTTGTAGTGGGAGGCTTGGTGTGAACAACTCCATTTGCCACTTACTGAAGCGGCTGTCTCAGCTCATTCTGTCTGGGTGAGCTTGGCCCCCTTGCTTTCCTCTCTGCCTCAGTTTCATCATCTGTAAAATGGGTTCTAGTGAAGAAGCTCGTAATAATCCAAGCTGACGTTTACTAAGGACGTTTGTCCTTGCTAAGATCCAGGCACTAGGCTGAGGGCTGACACTGCTTCAGTTAATTGTCCTTCTAGCCCTGCAGGGTAGGAACAGCTATATCTGTTTCCTGACCAGAGAAACAGGTGAGAGACAGTTGGACAGCTGAGAACTGAGTCTGCTATGTCTCGCTCCAAGTCCTGTCCTTATAACTTCTTCACTGTGCTGTCCCCCTGAAAGGATGGAGGCAGTAAATACGAGCATGTGTCAGAAAACTGCAAGCAGGCGAGACTTGGGTGGTGGAAACAGCTGTGGGTCCCTGGTGTTGGGCACTTCTGGGGGGCTGGGACAAGGTGTGTTCTTACCCAGTTCGTTTTCTCTGCAG
Seq C2 exon
AACAAGTTGAGGCAAAAACTGACTGTCATGTACGGCCAGATCAATGGGGCGTCAAGAGCGCTGGAGGACGTGAGAGCCAGGCAGCAGGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009948:ENSBTAT00000013121:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=WD(100=20.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]