DreINT0002544 @ danRer10
Intron Retention
Gene
ENSDARG00000090371 | BX664721.4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7EZC5]
Coordinates
chr7:73468253-73469203:+
Coord C1 exon
chr7:73468253-73468902
Coord A exon
chr7:73468903-73469107
Coord C2 exon
chr7:73469108-73469203
Length
205 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGTATTATGTATTGACAGGCA
3' ss Score
5.89
Exon sequences
Seq C1 exon
GAATGGCATCTCCCAGCAGCATGTTGGCGGAGGAGCAGGTGCACTGTTCAATCTGTCTGGATGTGTTTACCAACCCCGTCTCCATCCCATGCGGACACAACTTCTGCATGGCCTGCATCGGCAGCTACTGGAAGTCCAGCGCTCTTTTCATGTGCCCGATGTGCAAAAAGACCTTCTTCAAGCAGCCCGACATCAGCATCAACACAGTGCTCCGAGAAATCGCCGAGAAGTTCAAGGAAATGAAAAGAAATCCAATTGTAAGTCTACAAAGCGCAACTCAACCGGACCCAACACCGAGCCCTGTGGAACTCCCCATTGAGATGCCTGAACTGATTCCTCCGAACGCACCGTGGGCTCAGGAGGTGTCCTGCGACGTGTGCACTGGCCCTCAGAGACGGGCCGTGAAGTCCTGCTTGGTTTGTTTGACGTCGTATTGCGAGGAGCATCTGAAGACGCACACCGTACGCTTCACCAAACACAAGCTGATCGAGCCCGTGCTGAATCTGGAGGACCGCATGTGTAAGAAGCACGAGCGGCTGCTGGAGCTCTTCTGTAAGAAGGATCAGACCATAGTGTGTGTGTTGTGCACAGAGATGGAGCACAGGGCGCATTACACTATCCCCGTCGAGCGAGAGTGGGCCGAGAAGAAG
Seq A exon
GTGAGCATGCAGATGCTGAGATTTTGATTGAATATTACCAAACTGCTTGTTTTTAGTGGATAAACGCACTAATTAATTGTTCCCCTAAACAAAATCAATGTGCACTAGCAAAGTAATCATGGTCAATTTTGATTTCACATGGACTTTAATAAGGATAAGCGGATTAAAAGCGCCTTATTTTCACATCTGTATTATGTATTGACAG
Seq C2 exon
GCATTACTGAGGAAAACTGAATCTGAAGTCCAGCAGATGATCCAGGACAGACTGAAGAAAGTTGATGAGATCAAACACTCCATAGAGCTGAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090371:ENSDART00000123429:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF052906=Baculo_IE-1=WD(100=29.2),PF152271=zf-C3HC4_4=WD(100=18.5),PF134761=AAA_23=PU(33.7=39.4),PF0064319=zf-B_box=WD(100=19.0)
A:
NA
C2:
PF134761=AAA_23=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGAAGTCCTGCTTGGTTT
R:
TGTCCTGGATCATCTGCTGGA
Band lengths:
300-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]