RnoINT0156057 @ rn6
Intron Retention
Gene
ENSRNOG00000028812 | Trim80
Description
tripartite motif protein 80 [Source:RGD Symbol;Acc:1311352]
Coordinates
chr10:103993004-103997591:+
Coord C1 exon
chr10:103993004-103993668
Coord A exon
chr10:103993669-103997495
Coord C2 exon
chr10:103997496-103997591
Length
3827 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCTGCCCCTCTCCTTCCAGGTG
3' ss Score
14.07
Exon sequences
Seq C1 exon
GACCAACCCAGGACAAATCCCCCTCAGAGCTCTCTACCCAGTCCTCCAGAACCTCACTCCAGCTCCTGATGAGCAGCAACAGCAGTCAACACTTGTTGGAAGACCAAGTCCTCTGTCCCATTTGCCTGGATGTGTTCCGCAACCCGGTCACCACCGCCTGCGGCCACAACTTCTGCATGACATGCCTTCAGAGTTTCTGGGACCACCAGGCTGACACTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTTCCGAGCAGGCCCCGCCTCTGCAAGAACGTCATTCTCGGAGAGATGGTGGCTTGTTTCACCCTGGCCAAGAGCCAGACCTCAGGGCCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCTCAGAAGCTGAAGGCAACCAAGTCGTGCCTGCAGTGCATGGCTTCCTTGTGCGAGAAGCATCTGCACAGCCATTTTGAGGACCCGTTGTTCCAGGAACACCAGCTGTTGGACCCGGTGTGGGACCTCAAGAACCGCTTGTGCCGTAAGCATCGCAAGCTCCGGCAGATGTACTGCCGCACCGAGGGCAGCTGCGTGTGCGGGGCCTGCCTCCTGGAGGAGCACCAGAACCACGACACAACCCCGCTGGAGGATGAACGGGCCCGCAAGGAG
Seq A exon
GTGAGGAGGGCTGAGGAAAGACAGAAAGGGCGCGCTCCAGGCTCTGAGGATCTGTCCAATTTCTGTGGGGGAAAATTAACACAGTTCAAGTCGGGCTTTACGGCGCCAAATACTTGAGATACGAAGGCAGGAGTCTAAGAGGGGAACCTGTCTGAAAAGATACTTAGGCAGGGCCGATGAGATGGGTAGAGTAAAAGTTCTTGCTACCCTAAGTTTCACCCTTCAAGTATCTACATTTAAGTGGAAGGAGAGTGGGGAGTGGTAAGGTGCACCTTTAAGCCCAGCATGTGAGAAGCGGAGTTTGAACACCTGATCTATACAGTGAGTTTCAGGATGGTCAGTGCTGCATGTGAGACTGTCTCAAAATAAATTATATAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAGTAAAAAAAAAATTATATATATATACATATGTATGTATATATATATATGTATGTGTGTGTGTATATATATACACACAGAGAATGTATGTGTGTGTGTGTGTGTATATATATATATATATACACATACACAGAGAGAGAGAGGGAAAACCAACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGAAAACCAACTTCTTAAAGTTATCTATTGACTGGGGCTGGAGAGATGGCTCAGTAGTTAAGAACATTGACTGCCCTTCCAGAGGTCCTGAGTTCAAATCCCAGCACCCACATGGTGGCTCACAACCATCTGCAATGGGATCTGATGCCCTCTTCTGGTGTGGCTGATGATAGCGACAATGTAAATACATACATAATAACTAAATAAAACCTTTAAAGTTGTCTATTGCCACCCATATGTGAGCCTTGGTACTCACACGTGCCCCTACAATAATAATTTTTGAAGGGTAGGCAACTGCTAACATGATAGGCTATGTTATGGCATGAGAAGGCAATGGTTGGTTAGTGAGGAAGGCTCGTCAGAAGTCTCTATCGGCAGTGAATGACACTTGGTTATGGGGTAGGAAAGGTTGTTTACAAGTCTCCCTTAGTGATGCACCCAGAAAACACCTGTGCAAGATGCGCCTGCGCCTTACTCCTCCCAAGAAGCCACTAGAGACAGCAGCTGGAGAGACAGCTCAGCAGCTAGGAACACTGGCTCTGTTTCTGGAGGGCCTGGGTTCGACCCCCACCACCCACATGGTAGCTCACAACTGTAACTCCAGTTCCATGGGAGCGAGCAAAACATCCATTCCCATAAAACACTAGTTCGCTACAGGAACGGAGGTCCCCACAACCTTTCTTTAAGCGTCACTCCCAGGAAGCCATGTACTTGTGTGACCGTCCTCAGAGGAAGGCGGTGGGGGGTGCTCTACAACAGGCTTTTGAGAAATTAGCCTTAACAGGCTGTATAAGAACAGGTTATTATGAAAACAAAAAGAAGCATTTTTAAAAAGCACTTCCAGGCTACCGAGACTTAAACACAATGCACATGCCCCTGTAGTGAATCTGTTTCCAACCTTTGGGAGGCTGAAGCAGGAAGATGGCTTTGGGTTCAAGCTTAGCCTGGTCTACATAGCTAGTTTCAAGCCATGAGACTACATACCGGAAAGTCATTTCAGAAACAGGACAAGGGCCTGGAGAAAGGCTCAGTGGTTAAGAGACCTGGGTTCAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCAGAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAAAAAAAAGAGAGAGAGAGACCTGGGTTCAATTCTCAACACCCACATGGTAATTCAGAACTCTAGCCTCAGGGGATTCAGTACTCTTTTTGGCCTCTACCGGCACGCACGCAGGGCACGCAGACATTACCTCTAGGCAAAGATACCCATGCACATAAAAAACAAAGACAATAAAACAGAACAAAACCAAAACTGGGCATAGTGGCTCATGCCTGAAGCATTAGCAGCAAACGGCTTAGGCAAGAGGACCCCAAGTTCAAGGTCAGCCTGGACTACATAAAATAAACTGCCACTCCTCCTCCCACAAAAAATAAAAAGGTTGGGGAGATAACCCAATAAGTAAAGTGTTTGCTTTTATGACATGAGAACCTGAGTTCCACCCGCCAAGTTAAAAAAAAAGAAAAAAGAAAAAAGCCAGGCACGGTGGTGCACACTGGAATTAACCTGGCACTGCAGAGGCACAGCCGAGGGGATCTCTCGGGCTCGCTGCCCCGCTGGTCTAGCTGAAGCGTTGAGCTCTGGGTTCAGTGAGAGAGCCTGACTCAGAAAGTAAGGAAGGGAGAGCTGGAGAGATGGCTCAGCAGTTAAGAACGCTGTGCCTGCAGAGGACCTGGATTCAGTTCCTAGCCCCGCAACCTTCTGTAACTCCAGTCCAGTATATCCAAACTGGGTGCTCATGTGGGGCATATATACATACAGGCAAAACACATACAAAGTTTTTATATATAATATACATATATATATATATTATACACACACACACACACACACACACACACACACACATTTTCAAGACAAGGTTTCTCTGCATAGCCCTGGCTCTCTTTGTAGCCTTGGCTGTCCTGGCACTCCCTCTATAGACCAGGCTGGCCACAGAACACAGGAGTTCGTCTCTGCCTCCCATACTGAGATCAAAGGTCCCACACGCCTGGCTTTTTTTTTTTTTTTTTTTTTTCCAAAAAGAAAACATGACAGCAAGTGATTGAGGAAAACAGCTACTGTCCTCTGGCTTCAACATATACATGCAGTCACACACATGTACCCCCACATACATGTAGACACACATGACACACATATGAACACAGTGTATGTATGTACACAACACATACACACACACACACACACACACTGCAGCCTAAGTTGGCTAACTTCCTCTCCTGAGTCCTGCCTCCACCCCAGGCAAGGTCCCCAGTAGACCAGTCTGGTCTTGAACTCCCCATGAAATCAAGGATGACCTTGAGCTTCTGGATCCTACCTACACGTCCCCAGTACCCGGTTGTTCCTTCTACTTTCAAATTTTAATATATTTGTATTGCTTTCAGAAGTGAGATCCTCGAATATATTGGTTTTGGTTTGGTTTTTGAGACGGGGATTTTCCGTGTAGAAACTCACCCTGTAGACCAGGCTAGCCTCGAACTCACAGAGATCTACTTGCCTCTGCCTCCTGAGTGCTGGGATAGAGGCGTGTGCCACGACCGACTGGGTAAGCTCCTTATATTTCACCAAGCACATTCGATAACCTTGCTATCCTAACATACTGATCCGATCAGACCCGCAAGACAAGGAGCTTAGAAAAAGCGCAACTGTACCACCACTTCCTACCTAGCTCAAACCATGGATCCCTTCCCAGCTCCTGTGTCCTAAAACCCTGTGGTCATCACTATGAAGAACAACGAAACTGATCCCCGGGAAGGAGGAGCTACAATCTCAGGCAATGATAAAAACAAAAACCAACCAGGCCTTAAGGCACACGCCTTTAAACCCAGCACTCAGGAGGCAGAGGCAGAGGCAGGCAGATCTCTGAGTTAGAGGCCAGCCTGGTCTACAAGTACTGTCTCAAAAAAGAAAAAAAAAAAAAAAAAACATGCCTGCTCGTCTACCGTGGGTTCACGAAGGTCTGTGAATGCATCTCTTCTAGTTGGCAGTCAGGTCTCTCCAAGCCCCACTCTCTGAATCAGGGCGCTTAGGTTCTGCCCCTCTCCTTCCAG
Seq C2 exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAATCAAATGCTAATCATTGCCTCGGACAGCCAGAAACACCAGGGACGAGTGAGTTTCCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028812:ENSRNOT00000065292:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]