HsaINT0172257 @ hg19
Intron Retention
Gene
ENSG00000137699 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:17274]
Coordinates
chr11:119999108-120008863:-
Coord C1 exon
chr11:120007936-120008863
Coord A exon
chr11:119999204-120007935
Coord C2 exon
chr11:119999108-119999203
Length
8732 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCTGGCTCTTTCTCTGCAGACG
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTCCTCACAGGTGTGTCTCTAGTCCTCGTGGTTGCCTGCCCCACTCCCTGCCGAGACGCCTGCCAGAAAGGTCACCTATCCTGAACCCCAGCAAGCCTGAAACAGCTCAGCCAAGCACCCTGCGATGGAAGCTGCAGATGCCTCCAGGAGCAACGGGTCGAGCCCAGAAGCCAGGGATGCCCGGAGCCCGTCGGGCCCCAGTGGCAGCCTGGAGAATGGCACCAAGGCTGACGGCAAGGATGCCAAGACCACCAACGGGCACGGCGGGGAGGCAGCTGAGGGCAAGAGCCTGGGCAGCGCCCTGAAGCCAGGGGAAGGTAGGAGCGCCCTGTTCGCGGGCAATGAGTGGCGGCGACCCATCATCCAGTTTGTCGAGTCCGGGGACGACAAGAACTCCAACTACTTCAGCATGGACTCTATGGAAGGCAAGAGGTCGCCGTACGCAGGGCTCCAGCTGGGGGCTGCCAAGAAGCCACCCGTTACCTTTGCCGAAAAGGGCGAGCTGCGCAAGTCCATTTTCTCGGAGTCCCGGAAGCCCACGGTGTCCATCATGGAGCCCGGGGAGACCCGGCGGAACAGCTACCCCCGGGCCGACACGGGCCTTTTTTCACGGTCCAAGTCCGGCTCCGAGGAGGTGCTGTGCGACTCCTGCATCGGCAACAAGCAGAAGGCGGTCAAGTCCTGCCTGGTGTGCCAGGCCTCCTTCTGCGAGCTGCATCTCAAGCCCCACCTGGAGGGCGCCGCCTTCCGAGACCACCAGCTGCTCGAGCCCATCCGGGACTTTGAGGCCCGCAAGTGTCCCGTGCATGGCAAGACGATGGAGCTCTTCTGCCAGACCGACCAGACCTGCATCTGCTACCTTTGCATGTTCCAGGAGCACAAGAATCATAGCACCGTGACAGTGGAGGAGGCCAAGGCCGAGAAGGAG
Seq A exon
GTAAGTGCTGGGGCCCCTCCTGCCCCTCCAGGCCTCTCCTCTCTCACCCCACCCCTCCGAACTTCATCTTCTCCACTCGGGCTTCCTCGGGTTTGGGGCTTAAGTTTCTACTGTCCTTGGCTCTTTTAGAAAACATTTATTTCCCCTCATGCCCCCTGTCCCCCCTAATCCCAGCTGGGGATCAGAGGTTGCTCCCCAATCCCCTAAGGTCTCAGGAGACAGGGACATTTTCTAGATGAGCGGATGGAGACTCAGAAAAGGTTGAGGGCCTGACCAAAGTCATAGGATAAATTCGAGTCAGGTTAGAGAGTATGACCCAACTGCATAGACCTCACTTCTGGGCTCTGTGCCTGGCTGAGGTGTTTCTTTCTTCTTCTTCTCCTTCTCCCTCTTCCTCTTCTTCCTCCTCTTCTTCTTCTTTTATTTTTTTTTTTTTTTGCTTTGAAGAAGAGATAATTCCTCCAACCTGAGTCGGACTGGCCCCTGGGGAATGGGTTGTGGGTGAGGAAAGATACTAGAAGGAGAGAATTTTGGGGCCCACTGAAAGGTCCTTCTTGCTGTCTTTGTAGTTTTTATTGTCGTACAGTGGCTTCTTGTTCTAGCTGATCCCCAGCTGGTCTCTTGACTTCCTCCACAGCCTCCTTTATCCTTCTCCCAGCTGGGCCCTGTGTTTTGCGTGTGTGGTTGTGTGTGGACACACATATTCCTGCAGGCGGACACCGTTGGGGAAGTTTGGAGTTTGTGTGTGGATGGCGTGTACGTGTACAGCTAGTCCCTGACTTAGGATGGTTTGATTTACAATGATGTGAAAGTGCTATGCTTTCAGTACAGTATTCCATAAAATCCAACACTTTATTACAAAATAGGCTTTGTAGTAGAAGATTTTGCCAAACTGTCGGCTAATGTAAGTGCTCTGAACAAGTTTAAGGTAAGCTAGGTTAAGCTATGATGCTTGGTAGGCTAGGTGTATTAAAAGCATTTTTGACCTATCACATTTTCAACTTACAATGGGTTTATTGGTAAATAACCCCATCACAAGTTGAGGAGCATCTGTATATGTGTTTATTTTATGTGCACGTGGGTGTTTTTGTGCCTTTGTGGATGTTTGCATGTATTCATATATGTGATACGTAAGTGTGTTTGCATGAGTTCTATGTGACTGTGCCTGTACTTCTATGGGGAGGAGCAGAGGCAAGTGCAGGCTTGTGGATGTAGCATACCTGGGGAAGGTGATTTGGGCAAAGGGCCCAGCTGTGGCCACTGCCCTTTGCCCCACAGATGTGGGGCTCACTCTTCCCTAAGGTACACAGCTTCCTGCTGTGGGTGGCCTTCCTGGGGCAAACCTTCCTGGCCTCCAAAGCAGTGAACTCCACTTTCCTGAAGAGCTTCTGCACACCTCAGATCTGGACAGCAGAGGATTCCTTCCTGCCCAGCCTTCCTGACCAGGAGGAGCTGGTTGATTACTCTTTCCCTTCATCTCTCACCCACACCCCTGGACAGAAAGGGCTGAGGTAGAGAGGGGAACAGACTCACAGATTCCTTCCAGAAGCCTCGTTTGGCCCAGGAAGAAGATGTTTCCAGCTTCCCCCATCTTCTGACCCCAGCGTGGCCTCAGGTTTCATACTGAGAGATATAGATGGGACGGGGCCATGAAACTCATTCTAGGGAGTTTACTTGGGAGGTTAGACAGAACAAGAGGCAATCATCCTCATCACAGCAGCTGAGAAATTGCAGAGCCTCAGACAAGGTTTTAGGAAATGTGACCGAGTTCCAGTCCCAGTTTTTGCCTCTAACTAACTGTAAGGCTGTGAATAAGTCCTTTCCACGCTCAGTCTCATTCTCCCAAGGGGTGAGGCTAGATTGTTGGTTTTCAAATTACCCCACAGAGCCCTGGAATTCTTAGACATGTCTTCGAGGCCTCAGGATGAGGAGGGGGTAAAGAAGTGTCAAGAAGGCGGAGCATTCAGGTTCCCACCTCGACTACAAGCAAAGGACATTCTTATTGATTATCTTCTATGTGGGTTTGGCCTCAAATTTGGTCTCAACCAAGGATATCTCTGCTTAAGCCTGGGCACCCCTGGAAGATGTGGTTCTGGTGGGCAGGAGGGTCTTGGGCAGCCCTATGTGGATGTGCCAGGAGCTCAGAGTTCAGAGTTCGGGTTCTGGCATGGGGGCCGCTGAGGGACTCACAGTTCTTCCTTGAGGGAGGGCTCATGATGTGGGTCAGGAGGCAGGGCTCATACACACAAACAGGACTGGGGAGCGCCCGTCTAGTTACACAGAGCGGCTAGAAGTTAACGTCAAACCGTAGTAGACAGAATGCCGGGCCAACAGAGTATTAGCCACCCCCTCAGTGTCCTCCCTCACCTTGCAGATAGGGACACAGGCACAGAGGAAGGAAGGGGCCTGTCCAAGGTCCTTGTTTGAGGAGGAAGCCCCCTAAGCCCTCTTCCAGTGTTTGAGAGTGCCTCAGGGAAAGGGCCCCAAGGGGATGGGATTGGGATATGTGTGTTTTAGGAGAAAATGCCTGGTCCTCTAAAGTGACTGTGATGGTGGGAGCTTCAGGTAGCCTCCGTGTGTGTGCACACACATGTGCACCTGCAGCATAGGGCTAGGCGGGGAGAAGTGGAGCCAGGAAGCCAGGAGACTGAGCTGGGCACACGGGCTGTCTCGGCCTGGCTCTGCTGGAATGTCACAGGTGGGGGACATTGGCACAGAGCAGGGTTAGTGGGTAGATGGGCCAAAGTGAATGAGCATGCCAGTCCTGGCATCCTTTTGAGGCATCTCCTGCAGACCCAAACATCAGCCCACGCATAGCTGTTTGCAAGTGGCTTTGTTCAGAACCCGTTCCGCAGGCCAGTGGTGAAGGCCCAGGTGATACAGCCTCAGACCTGCCTCGGTTGGTGGTGTGAGGCTACGATGACACCCAGGGCTGTGGGTGCCTGTCTTCTGGGCCTCAGCTCTACCTACAGACTCTGAGCAGAGTCTCTGTTAGAAAAAGATCGCTTGGTGCGGCAACATGACAGCACCTTCCTCTGGTGGTCCCTGGGTCAGCATGTTTCCAGTGCCACCCCAAATGTCACAATAGGCCTCATACATGTCCTCCTGTCTTCCCCTCTGCCACTGAACACTTCCCAGGCTAGGTTAGGTGGGTGAGATTGAAATGTACACATACATCCCTTTCTGTGTCTTATGGCCCTTCCTTCTGCCTATCTCAAGCTTCAGCAGGCCAGGATGTTAAGACCTCCTGGGTGGACGGCTGGCTGCTCTTGGGGGGCCCTGCACTGTCATGGATCTGGCCTGCTCTGGGGTGGCAGCATGACGAGGCGTGTGTGGAGGTCACTCAGCTAGGAGCATTGCTTTGGAGAGGCTTAGCCTCACACCTCCTCCACTCTCTCAACCCCACCATTTGGTTCAGTTCAGTTCTCTCACCACATCTGTGGCTTTGTTTCTCGTCTCATTCCCAATTCTAACACAAAAGCTGAGCCACTGGCTGCTGGGCATGGGCAGCCGCTGGTCCTTGCTTTTCTGAGCAGCGCTGGTCTGCCCAGGAAAGCTCTTTGGGATTCGGGAAGGGGAGCCAGGCTAAAGGCCAGGGTGCCCTGGAGGGGCTGGGCCCACTTTCCCTGGAGACCTTGGTGACTTTGGGGGAGAATGCTTGCCCTGGGACAGGGTGGGTGAGAAAGGAGGTAGGGGGGCCTCTCTGGGTGCTAAGGGGGAAATAACAAAATAAAAGAAGCTTGGAGACAGGAAGCAGGGGAGCAAAGTGACAGGCAGGCAGGAGGCAACCCAGTGTCTGTGGCACACACCTGAGTGCCAGTGCCGGGCCCAGCATGTCCTACTTGTAGATGAAGAAACAAGGTCAAAGTCGTCAAGAGACTTACACAAGTTACAGCACTCAAGAGTGGCAGAGCTGGGATTCCTCTCCGCTATTTTAAGCCTTTTTGTTCCTGTAGGATTGGAAGGGTCTTCTTGAGATCACCGAGTCCAGTGGCTCCCAAACAGCAATCCCCAGACCAGAATCAGCTGGTGAATTGTTGAAACACAGATTCCCAGGCCTTAGCCCAGGAGGTATTTTAAAGGTCTCCCTAGAGAATTCTAATGTGTAGCTGGGTTGGGAATCAGAGATCTAGTCCAATTTCACCACAAGGAAACCAAGGCCCAGGAAGGGGAGGTTCCCACTGTGCCTGCGTCCCCATCTGCAAGGTGAAGGAGGAGACTGAGGGGGGTGCTAACTCTCTGTGGGCCTGGCATTCTGTCTTCTTCCCCACTCTTGGCTGGAGATGGCCAGGGTGATACCTTCCTTGCCCCATCTCACCCCTCCCCTGACCTGAGGCTGTGAGGAGGCAAAAGGAACAGTAAATCTCAGTCAAACAGACTAACTGATCCTGGGCTGTTTTACGTCCGAGTGGAAATGGGGAAATCTATCCAGCATTTCAGATTCTTATCCAGATAATTACCATTTGTCTGAGAGTACAAATTTGGCAATTAACTGGCTCATTTGGCAAATGTCACAGCCGATGGCCCATGTAGTGAATTCAGGCCAGGGGAAGATCATGGCCAGTCCTCTCCTCCCTGGAGCCAGTGCAGGTACACCTATCCGGGTGGGTGCTCAGGTGTGTCTCCACCTGAAGACCACGTCCAGGTTGAGGCACTGCTAGCTGCTGCACCACCCATCTGCTCTCGGGAAAACCTCTGCTCACCCAAGGCTGAAGGATTTCAAGGTTAGGTGGCCCATGCAGGGCCCGTTCCTGGCATCAGAGAGCAAGAGGCAAACAGACAGGTGTGGGAGAAGGGAACAAAGGAGTCATTTAGGGACAGGCCTGGGCAGGGAGGAATGAAGCGGAGAGTAGGAAGTCAGGAGGGAGGTGTGGGCAGGGCGGGACTGTGGGGATCAGAGGCCCTGTCAGCCATCAGGGCCTTCAACCACTTTCTGAGGGAAGAGGGAGAGAGGGAGAGAGAAAGCTGGGGCCTCAGAGGACAATGGGGAGGGTGCTGGGAGGGAAGCGGGGGCAAAAGGAAAGAGATGGAACTGCCAAAGTGCCATCTGCAAGGTGAAGGGAGCATGGGAGGGCTTAGGCCAGCAGGAGTGAAGGGGAAGGACGATGCCACAGAAGACACACAGGACAGCCTAGTGCCACCACCTCTAGGTGCGCCTCTTGAAGCACAGAATAGGATCTGAGTCCTGTTGTTGAAGCTTGGCCTTACCGCTTTCCAACTGTGAGAACTCAGGCAAGCTGTGTAATCTTTATAGGCCTCGGTTTTCACACCTGTGAAGTCGGAGGGATAATGCCACTTACCTCCACAGGAGGCTTTTGCTGGTTAAAGGAGAAAAGTCCTGGCACATACTAGATGCTCAGTAATCAACACTGCCTTCCTTCCCTCTCCTAGTGTTGAAGGAGAGCCCAGCGACTTTTAAACCTTCCCATGTTATATTACTTCCTATACAGGAAAAATTGCCAAGAGCTGAACAGACACAAGGTGCATCCCTAGCTGTCACCCCAAATGCTCCTCCCCCGACAGGGTAGGACTCATCCCAGAGGTGAGAAAGGACCATTCTAGCAGCACAGAGTTCCCAGTCCATGGGAACTCCAAGAGCCTGCTGTGTCCTGCCGGTCTGGTCTTGCAAGACATGCTGTGGGAACAAGGCCCCTTCCCAGCCTGTGTCCTACTTCTTCAGTGCCCCAAAGAAATAGGAGGCCAAGTCTCTCCTCCACCCTGACCGACTCTTCTGCCCACAGCTGCAGACAGTCTCCCCTTCTGGCCCTGCCCTCACAGGTTTCCACATCATCCGCCAACACCTCTGGCTCTACTCTCCACCCCTCGGTGCTCAACTAGCCCTATTGCCCTCTTCCCTTGTTCTCTTACACAGGATGGACTCCTGAGGGACTGGCCTCTCCCTGCCCTTGGCCTAGACACTTCTTTGTTCTAATCCCCATTGAATTCTGCATCCCTGAACTCACTATCTCCTTCGTCTGTCTTGGCCAATGAATCCACGCTCACCTGGGGAGACCTTTCCTCCTCTGCAGCCCCAACCATGCAGCCCTCACCTGGTCTCCCTGTGCACTTCTGCTCACTCCAGGCACTCAACTCCTGGCCTTCACCTTCTCTGGTCAGACCTTCTGCCACTTGCAGGTGGTTAGTCCACCCTCATCCCCTTTTGTCCTCCTTCATTTCCACCAGTGTCCTCCAATCTTCAATTATCCATGAGCTACGCTTCCCTCTTGCATTCAGCCCAGTGTCTTGACCTCACCAGCCTCTCTATGCACTCCCTACTGTTCACTCTGTGTCCGGACAGTGTACACACTTCATCTGGATCCCAATCTGACAGCGTACACTATCCTCACCACTGAACACCACCAACCCCTCACCTGACCACATCTGCTGTGCTCCTCACTTGCCAATGCCGGGCCCACCTGCCCACCATGCTGCACACACTGCTCCGAGCATGGTGTGAGTGAAAGCACCCAGCCTGGCCCCTGGTCCATGGAAGTTGCCCACACAATAGTGATGATGGGAACCATTGCTCAGACAGTGCTCACGCTGTGCCAAATGCTTTCTGGGGGCTTCACTCCCAATCCCAGGGCATCCCACAGCTTCCCTGGAAGGCAGGTCCTCTTCCTGCTCCCATGGACCAGACAGGGCTACTGAGGCACAGAGAAGCCAGGCAACTTTCAGAGGCACCTGCTGTCCTGTGCTCCTGGGGAGCCCCCTCTGAGCCCACCATTGCTCATTTCATGGAAGGGCTGCCCATCTCCTATTTGAGACAGGACTTTTACCAGCGCTGGGCCCTGGCCTATGGTGGGAGGGATTGTGTTTTGTTCTCTGCTTTCCTTTCCATCAGACCTTGTCCTCGGGGTGGTAAGGTGGGGTGAGGAACCCAGGTGCCAACTCCTCCATCACTGAGCTGGGTCAGGAGGTTGGGGGTCTCCAGCTGTTCCCTGACCTTGGACTTCACTCAGGAGTTCTCCAGGGATGAGAAAGGTGCTTCGGACAGACCCCCAGTCCACTCTCTTGGACTCTTCCTCACAGCTCAGATCTGCTTGCCAAATCCAGCCTCCTAAGAGGCCTTTGGGGCTGTGGGATCTGCCAGCCTGTGTTTCCTGGGCTCTTGGGCTCTGCATCGTCAGAGAGTGTGAGGGTCGAGTTTCTGCCATTACAGTGGGCCTGCTTTCTCTGTTTTCCACTCTCTCACCACCTTATTTAGTGGCTGCTGGCTTCTCTCCAGACTTTTTTCCAGAGATGGGGCCAAATCTCCATCCTCATCTCCTTAGGTCCTCTTTTCCATCTCTGGTGATGGTATTTTCCATGCTATGGCATTTCCGGCCGTTTGCTGGTGGGGCAAATGCTACTGAGAACAACTCTGAATCTCCCTGCCTGGAGAGTCCAGGAATGTGGTGGTGGGGGCGGGGAGGCCAGGGATTCAAGGACTCTCTGGGAAGCTCTGTGGCTCTTGCCCCATGCCTTCCCCACCCTCCGGGCACCTTTTCCAGGAAAGCCAGGGAAGCTCTATCTGCCATCGGATCCACTTCCCCGGGTGCCTGCAGGAGGTCCCCTGTTAGCACTTCCTTGGCCCGGTGGGGCGTTCAGAAGGTGTGCCGCATGGTGTTGCATGTGCCCAGGTGCTCATGACTCCTGGCTGATGGGACTCCCATTCCTAGAGGTTTGTGGCATCCTCACCTTGACTATTCTTTTGGGCTCCGCAAGGTGATGGCCAGAGAAAGGGGTGGGACTCTGCATTCAAAACCCAGTGGTAGTGGGGAGATCTGGAGCAATCCAAGGCTCTCTTGGATGCTTTGTTCTGTCAGGTGGAGATCATCCACCTATTGTCCATGCTAGAAGGGGCTTTGAGTGTCCTACAGGACAGCCCAGCAGAACAGAGGCTTGGCTGGATGGGATTGGCCTTAGCTTCATGCCTCTCCTTTTGTCTCTATTGTGGCTGCTTTTCAGAGAAGGGCATTTCCCCACATGAAAGGTGAGTATGGGAGTGAAAGCTAATGTCCCAGTGTGCTACTGATACAACCTCTTCCTAAACCACCCCAGACCCCAACAGTCTGTGTCCTCTTCCTGAGCAGGGGTCCCTACAACCTCTTCTTCCACTCTACACTGCCTTCCTCTCCAGCCTTCTCCTTCCCCAGAGCCCCTGGGTAAAAGTCTCCGTCTTGCCAAAACTGCAGAATGCCTTCCCTTTCCCATAAACAGGTTTTATAGCTGTGCCTGCCCAGACGGAGTCCACGCCGGCGGCAACCCTGGCTGCTGCTTGCAACACAGCCCTACGTCATGCCATAGAAACGCTGCACACTGTTACTGCCACGAGACACTCCCTGGGCTGGGCTGGGCTGAGCTGGGCTGGATCCCCTTCCTTTCTCTTCCCATTGTCCCCAGGTCCACTGAAAAGGGCAAGCACCCTGTAAATGAGTTTCCCTCCTGCTCTTGCTGGGTGGAGGAGATAGGCAGAGGTTTAGCCCTTAAAAAGACATGGCTAGGATATCCAGCCCTAGTGGCCTGAGAATACAGCAAGATGGTATTTAACTTACTGCTAGATCCTTGGCGACTGGCATGGTGCCTGGCATATCCGAGGTCCTGATGAATGTTTGCTGAATGAAGAGCTGAATAGATGAGTGATGAGCCCTGGCTGCGAGTGTGCCCCCTGAGTGGAGCCGCTCCCTGGTTCTCTGGTTCTCTTCCATCTCCTCCCCCTGACTTCTCCAATCCTGGCTCTTTCTCTGCAG
Seq C2 exon
ACGGAGCTGTCATTGCAAAAGGAGCAGCTGCAGCTCAAGATCATTGAGATTGAGGATGAAGCTGAGAAGTGGCAGAAGGAGAAGGACCGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137699-TRIM29:NM_012101:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=15.3),PF136541=AAA_32=PU(25.3=15.3),PF082026=MIS13=PU(31.1=18.7)
A:
NA
C2:
PF136541=AAA_32=FE(19.1=100),PF082026=MIS13=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)