MmuINT0165085 @ mm10
Intron Retention
Gene
ENSMUSG00000032013 | Trim29
Description
tripartite motif-containing 29 [Source:MGI Symbol;Acc:MGI:1919419]
Coordinates
chr9:43310848-43319421:+
Coord C1 exon
chr9:43310848-43311679
Coord A exon
chr9:43311680-43319325
Coord C2 exon
chr9:43319326-43319421
Length
7646 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
CCTCTACGCTTTCCCTACAGACC
3' ss Score
11.03
Exon sequences
Seq C1 exon
GCAGACACAGGCTAGCAAGTGACCTACCATGGAAGGTGCCGATGCCTGCAGGAGCAATGGGGCCAGCCCGGAAGCCAGGGACACCCGCAGCCCACCGGGTCCCAGCGGCAGCCTAGAGAATGGCACTAAAGCAGACAGTAAGGACACCAAGACAACCAACGGGCACAGTGGGGAGGTGACAGAGGGCAAGACCCTGGGCAGTGCCCTGAAGTCAGGGGAGGGGAAGAGTGGCCTATTTTCCAGCAATGAGTGGCGCAGGCCTATCATCCAGTTTGTGGAGTCTGTCGACGACAAAGGCTCCAGTTACTTCAGTATGGACTCTGCGGAAGGCAGGAGGTCCCCTTATGCGGGGCTCCAGTTGGGGGCTTCCAAGAAACCTCCTGTGACCTTTGCTGAGAAGGGGGAGCTGCGAAAGTCCATTTTCTCCGAGCCCCGCAAACCCACGGTGACCATCGTGGAGCCCGGGGAAGTCCGCAGGAATAGCTACCCCAGGGCTGACTCCAGCCTCCTGGCGCGGGCAAAGTCGGGCTCCGAGGAGGTGCTGTGCGACTCCTGCATCGGCAACAAGCAGAAGGCCGTCAAGTCCTGCCTGGTGTGCCAGGCTTCCTTCTGTGAGCTGCATCTGAAGCCCCACCTGGAGGGCGCTGCCTTCCGGGACCACCAGCTGCTCGAGCCCATCCGAGACTTCGAGGCCCGAAAATGTCCCTTGCACGGCAAGACTATGGAGCTCTTCTGTCAGACCGACCAGACCTGCATCTGTTATCTCTGCATGTTCCAGGAGCACAAGAACCACAGCACCGTGACGGTGGAGGAGGCCAAGGCAGAGAAGGAG
Seq A exon
GTGACTTGCTAGGCCCCTCGCTGCCTTCCCTTAACCCTCCCACTTGGATCCTCACTGGGGACTTATGGCTTCACGGTGCTCTGCTTTTAGGAAACATTTCTTCCTCCTCTTCATCTTCACCCTGGGGGTCAGAGGTCACTCTAACTTCCAACGATCTTAAGAGGGACATCCCGTTCGAGCCAACAGAAGATTAGACGCTAGGCAAAGCACACCAGATGAATCCTAAGTCGGGCTGGAGTGTAGAACGGAAGGATTCAGAACTCTCTGCTTGGCTGATCTGTTGTCTGTCCCTCTGTCTGTCTCTCCCTCTGTCTGTCTGTCTGTCTCTCTCTGTCTCTCCCTCCCTCTCTCCCTCCCCTCCCCCTGTCCTCACAGGTGATACTAAGGCAGGAAGACTCTAAGAGGGGACTTGAGGGCTCCTGAGTACCCTTTTTTTCTGATTCCAGGTTTGCACTTGCAGTCCTGCAGCTGCTGGCTCTGCCCTAATCTGGAAGTCACCCCACCCCACCCCACCCACCCCCATCCCCTCCTCTGCTCTCAGCTGGGCCCTGTGCCCTTTGTTTGTGTGGCTCCAGCAGACAGGTCTGTGCCTGTGGGTGGACAACATTGGATCGAGAGCATGTGTGGGTGGGTGGATGTAAATGTGTGTTTTATACGCACACGGGTGTCTGCGAATGTGGGTGTCTGCCCCTATTTATGTATGGGCTACGTAAGTGTGTTTGTGTGAATTCCCTGTGTGCAATTAGGCGGTACTTCCACGGGGAGGAGCAGAGGCAAGGCAAGTGGAGACTTGTGGGTGTGCTGCACCTGGGGAAGGTATTCTGGGTAAGGCCCAGCTGTGGCCACTGGTCTTGTCCCTTCCTGAGCTCACTCACCCAGTAGCATGTGGCCTTCCCAGGGGCAAACCTTCCTGGTGGCCAGGGCAGGGGCTTTACTTTCTTGTCAGCTTTTGTACCCCAAGGGACTCCTCTTTACCTAGCTCCGTGATCACATGCTTGCCGGTCACTCACTCTGTGCCGCTTGCCACTACCCTCGGGCAGCAGGTTCTGAGTCGCAGGTGGAAACAGACTCAGACATCCTCTCTAGACGCTTCATTTGGCTCCCAAAGGTGTCTTCAGCTTCTCCTGTCCCTGGCTCCAGTGTCCTCTGACACCAGTGTCCTCTGGCTCCATCCTGGCCTTTAGCTTCAGGATGGGAGACAAGAGAGAGGGAGCGTGAAGCCATTCTTAGGGACTGTGCTGGGGAATTCAGGACAGAAGGAAGGCACTGGGAACTAGTCTCAGGCCTGGTGTAAAGATGGTGCCAGTCATGAAATGTAAGACAGTGACTAAGCTCCCTCCATGTGAAACCGAGGCATGGGTTACACCAGCGGTTCTCAACCCGTGGGTCAGATCCCTCTGGTGAGTCTCTATCTTAACAAACAAACAAACAAACACCACTGCTCTAGACTGTGTTCATGTTTCTCTGTCTTCACAAGAGTTTTAGAAGAGTCTCTGAGGACTCTGGGGTGAGAAGGGGGACAAAGCAGATACAGAAAGCAAAGGTTTCAGGTCCCGACTCCCACGAAAGCCTGGTATACCGCTGGCCTCTTTTCTGGGCAAACTTTGGTTCCACTGTGAGCATCTGCAGAAGGGCTGATTCCAGAGGGCAGGAAGGTGTGGGCATTCTAGCCTAGAGACACAAGAGCTTCCGAGTTTGCTATTCTCAGCCAGGGGCTGCTGTAGGGCTCAGAGAGTCCTTGACTCCAAGGGCGTGGTAAAGAAACAGAGTCTCAGACATACAAACAAGATGGGACACCCTCCCAGGTACGCAGAAGCATGAACACGGAATTGCAGAGGGAGAATACCAGGCTTAATGGAGCATTCTCAGTCTCTCGGTCTCCTGTTCACCCCGCAGATGGAGGGAGGGCACACCCAAGGGAAGGATGGAACCTGGCTGGAGAAAGCTGTGCCTTGGACCCACCTTGGGAGGGAATGGGATACTGGAGTGGCTGCTATGGTGGGAACTTGGGGTAACGTGGGGTAACAACTCACCTGTCTGTGCTCTTGCAACACTAGGATAGACAGACAGGAGTGGGATTGAGCATCCAGGAGACAGCACAGAAACAGTGTCTGGGGCTGGCTATTATGGGATGTCTGACTTGGGGGGACTTTGACCCAGAATAGGGGAGGTGGTTTGATGGATTGGGGTGAAGCAGAGTGTCAATTCTGGCATCTTCTGAAGGCCTCCGAACCAAACTCAAACACCAGCTCCTGCATGCCTTTGTGCAAGGGAGCAGGCAGAACCAGCTCTGCAGGCCTGGTGGTGAGGCCAGGTGAGGTCATTAGGCAATGTCTAGGTTAGTTGCACAAAGCTGAAGATGACACCCAGGGCCACGGGCACTCATCTCCGGGGCCTCCAGCCTATGTACAGACTTGGAGTACAGACTGTGCTGGGAAAAGATCATGTGTTGTAACACATGATAGTGGCCCTTTCCTCTAGTGAATCTCAGTGCTTCCCTCTCTACTCTCAATGTCCCAATGTCCCATAGGTGCTCACTGGTCCAGCTTATACCTCTGTGTTCTCTCAGGCTATGATAGGAGATAAGATGAAGAGGGATATCAGCATCCTATTTATCCATCGTCCTCCCTAACCATTCCGAGTCCTTCCAGCTACAGCTGCCTGCTCCAGGTGGCCCTGTCTTAAGGTGCATTTGACCTGGTCTCTGGGTTGACATCGTTGGCATAGGAAGGTATATGCTGCTGACATTCAAACTGGAGTGCTACCCCAAAGGGCTCACACTAAGTGACCAGTCCACATTCTAGATATCCTCATCTGACTCAGTTCTCTTACTTTGCCTTGTGGCTTGATTTCTCATCCTCTTGCCCAATTCTTTGAGCAAGACTGAGCCACTAGGGTAGCAGGCTAATGCAGCCACTGGTCCTTGGGTTTCTTGCTGTGCTCATTTGGGGAGGAAAGCTCTTTGAGCAGGTGGTGGGGGCTGGGGTTCAGGAAGAGGAGCCAGACTAAAAGCTGGGCTGCTTAGAATCTCATTGGTCATTTTCAGGGTCTAGGTGTGAGACGGGGGCATGATCAGTTGGATGAAGAGGGGAATCCATTAAAGGACTGGAAAGTGAGAACCAGGCAGGTGGTTGGTGATCCAGTCTCTAAGGAGCTCCCGTGGGTGGGTCAGGGTTGGGCTCAGCATTTGCATGATTACAAATGAAGCAGTCCTGAGGGATGGAGGGCAGGCTCAGTGATGCAGGGACTCATACAGGCTAGGAATGAAGAGTTGAGGTGGGGCGGGATGGAGGGTTTCTCTCTACTACTTCAAACCTTTTTCCCTAGCAGGATTAGAAGAGTCTTCTTGTGATCATCAAATCTAGGGGCCTCCAAACTTCAGGCTGCAGGTGGGGGTCACTCGGTGATCTGTTAGAAAACAGAGTCCCAGTCTCTGCTCTGAGACATTCTGGTTCACAGGGATTCTAATGTGTAGCTGGGCAGGGGAAGGTAGCCCAATTCACCACAAGGGAAATGAAGCTAAGGGGTGGGTAGTGACAGCTGTAGGGCTCCTCCATGGTCTGCAGATGCCAGGATGAAGCCTCGAACTCTGGCTGGCACCATCCTTTAACCTGAGGCAGGAGGAAGCTGAGGGAGTGAGAGGGGACCCCTCAGTGAAGCCTGTGGACAGATAGGAGGCCATTTGACATGTGAGCATAGAAATATGAAATCTATTCAGCATTTCAGATTCTTATCCAGGTAATTACTATGTGTCTGAGAGTACAAATTTGGCAATTAACTGGCTCATTTGGTAAATGTCACAGCCCAGGGCCCATGCAGTTAATCCAGGCTGATGGAACAGCTTGGCCAGCCAGGTTCTTCTTTCCCGGGGCCCTGCTGGTCCACGGGTCTAGTGCTTGACTGTGTCTACACTTGATCGCCAGTCTAGGCTGAAGCACCCCAGGAAGTGCCATCCCTCTACTCTCAGGGGGCTTCTACTCACTCAAGGCCACAAGAATTTTAATGCTGAGCAACCCACCACAAAGGCCATCCTAGCCTTCACAGAGGAGAGGCCCCAGACAGTGTGGGAGAAGGGAACAAAGGAAGCATTTAGGGACAGGCCTGGGCAGGGTGTAGAGAAAGAAGAGAGGAGTGGGAGGAAGCCAGGAGGGAGGAAAGGGGAGGGGTGGAGCACTGAGGCCTGTCAGTCATCTGGAGCATCTGGGGGAGGGGTAAGGGGAGTAGAAGAGTGATAGCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGCAGTAGGAAGGGAGAATTGCTGAACTTCACCAGCTCCAAAGAGGAAGGAATTCGGTAAAGGACAAGGTCTATGTCCTAGGAATGTCTAGACTCCTACCTCACAAGGGGCTTCTGAAGACCACAGAACAAGAAATGAGCCCCGTGATTATAACTTGCCTTTACATCTCTTTCTCAATGTGCACACTCGGACCGGTTACATAGCCCCTTTAGGTCTTGGTTGCTGCTTCTGCAGTGTGTGGCTAACACCACTGACCTCCACAGGGTCTTTGGCTTGTAGGAGATGCTCAGTAGCCCAATGCTATAGTTATGGTATCTTTGGATATCCTGTTGTTACTTTCTATGCAGAATAAAACCTGACAAACACTAAGAAGATCCGAGGCACATCCCTAGGGATCTGGCTCTAACACATGTCCTCAATGGGACAAGACTCCCCCTAGATGGGAAAAGGAGCCAATACTGTGACACTACTTCCAGCTCCAGGAATACACTGTATCCTGCAGGTCTGGTCTTGCTGACCATGGTGTAGGTACCGGGCCTCTCCCAGCCCATGTCTAACATCTTTAGAACCTCAGAGAAGAGGAGGGCCAGTCTCTCCTCTGCCCTGACCCATTCTGCCACCCACTGATGCAGACAGCCTGTCTCCGCTTCTGATCCTGTCCTTGCACGTGCCCAGGCTGGCCATCTCCTCCTGCCAACATAGGTGGCTGGGCAACACCCCAACTCTCCTCTCCAGACCTCAGATGGCCCCTGCCCTCCCCTTCCCTCCCTGTCTTTCATAACTGTGGACTCCCAGGAGCTGATCTCTCTTTGTCCTTAGCTTATATGCTCCATGGCCTAAGCTGCATTGAGCTCTATCCCTTGGACTCGGGACCACCTTCCTTCCTCTTGGCTAGCCAATCCAAGGGAGAGCCTTCATCCAGCTGTGGACTGGCCACACAGCTCTTGATAGGTGTCTTTGGTACCACGGTTCACCTCCAGCTCCTAACTCCGCCATTCATCTTCTTCCACTAGCAGGGCTTTGCCTTTTCTCCACCTTTTCCAACCTCTTTCCTGCTTCCCCCAGGGTCCTCCTTGCAAGGGGGTATCTTACCCTTTAAGGCTGGTGTCCCAGCCATTGTCCACTCTGAAGTCTGCCCACATCCTGACTGTGTCTATACCACATCTGGACTCCATCAGTCCCCACGTACCAGCCTCACCATCTAACATGTCTCAGTCACCTGAGCACGTCTGCCACTACCCCACTTGCTATATCTACCGCCTTGCCCCACCTGGGAGGTGCCGTAGAGAAGTGGCCATGGGGACATTACTCAGTCAGTGCTTACTCTGTGCCAGGTGCTTTCTGAGAGCATCACTTGGTGATCCCCATCTCTCCTACACCCTTGGTAGTGGGTACGGGTGCTCAGGTTTCCTCCACAGCACAGATGGAGCTAGAGCACAGGGAAGCAGAGGAATTTATAAGACCCCACAGCCTGCCTGCGGGTGGCGATTAAGGGTCTCAATCTTGGATTCTTATTCACGAGCTTTGAGTGAACCTATTCGAAAGACTTAGCTACAAAAGATGGGAGGCCTCCTGCTCTACTTGGACCCTGGTTTCCCCCAGGAATTCTTTAGGGATGGGAGAGTTGCTGGGACACACCCCTTATCCTTATCCTTATTACACACTTTCTATGCCTATTCCTCAGGGTACAGAGCTTCTGCTCAGGCCTGGACCACATTAGGGTCTTTAGATCACTAGCTCTGCAAGTGTTGTTTCCTGGGCATTTTGATTCTTCACCTCAAGGAGCAGAGCTGGAGGGTGAGGGCTTACTCTCTTTGTTCCCCCCACCCCTGCTGCTACTGTGTCTTCTCTCAAGCTTTGTTCCAGAGACCCAGCCAAGTCCCCACCCTCATCTCCTCCTGCAAGCCTGTCTTCCTCTCTGGCGATGGTATTTTCCATGCTGTGGGGTTTTCAGATGTTGGCAGTGGGACAGGTGCTTGCTGAGAACATCCTAGACTCTTTTTGCCTGGAGAGCCTGGGAATATGGTGGTGGTGGTGGACAGGTCATGGAAGCAGGACTTCCTGCCTGGGAGTGGGGGGGGGTCTCTGTGTCTCCTGAGTCCCTGTTTTCCACACCTCTGGGCACCAATTTTAAAAAGCCAATGGGAACCTATTTACCATTAGAAGCCATGCTCTGGGGATTGTTGCGACCATCCCAGGGCAGTCCCTCAGCCTCGGCTACAGGCGCTCCTTGGTTCCATGTTCTGTTCAAAAGCAGCTGTTGATGCTGCAGGCCCAGCTGCTCATGATACCCTGCCTGGAGAGCTCACCTGCCTCATGGCTTGTGATTTCTTCACCTTAGCCAAGGTGTTCTTGTAGGTTCCCCGGGGAGATGGCTAGAGAGACGAGTAAGAGTCTGTTTTTGAACCCCGGTGGTTCTGGGAAGCTCTGAGTCATGCAAGACCTCCTTGAAGGATCACCCCTTTATCTTCCAAGCTGGACAGGGCTTTGGGAGCCCAAGTGAGGCCCAGGAGGAAAACAGAGGTGCCTTTGACTCATTGGATAGCCTTGGCTTTAGCTTCACACCTCCAATCTGCCCCAGTGAGAGCTACTTTTCAGAGGAGGGCTTTTCCCCACATGGAAGTCAAGGGTGAGTGTAATCCTGATGTCTCAGTGCCCTCCTGATAGAGCTTCTTCCAAGCCTACCACAGGGTCCGACACTCTGTGAGCCTCTGAACACGGTCTCAGGTCCTCTCCTCCACTGCCTGGCCTCACCCTGTAGTTTTTTTTCCTTCAGGGAGCCTGGGGGAGTGTTCCCATCTTGCCTACACTGCAGATACGCTCCCTTTCTTATAAACAGGTTTACAGCTGTGCCTGCCTAGACGGAGTCTGTGCCGGCGGCAACCCCAGCTCTTGCTTGCAACACCAGGCCTGCGTCATGCCACAGAAACGCTGCACGGGGTTTCTGCTACAAGACACTCCCTGGGCAGGGCTCCACTGGACTGGGCTGAGTCCAGATCATCTTTTTCACCAATGGCCTAGGCCCACTGAAGGGAACCAGAATCTTCCACCTTTCGGGTTAGGTAGGAAGGCTCTAGGAGGCTTAGGTCCTATAAGGACACAGCCAAACTGCTCAGCCCTAGTGGTCCATTAACACAGAAGCATGGCATTGTATACATTGCTGGATTCTTAGCCAGTAGCACAGAGCCCAGCAGATCTGAGGTACTGATATCATGAGCTGAGTGAAGGGCTATACAGATGCATGGGGAATGTGCCTGAGTTTGCTCTATGGTGAATCACCAGCCTGGGTCTCTGGTTCTGTCTCCCCCGCCCCTCTCTGTTCCTGACAACTTCAACCTCTACGCTTTCCCTACAG
Seq C2 exon
ACCGAGCTGTCACTGCAAAAGGAACAGCTGCAACTGAAGATCATTGAGATTGAAGATGATGTTGAGAAGTGGCAAAAGGAGAAAGACCGGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032013:ENSMUST00000034511:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types