HsaINT0172257 @ hg38
Intron Retention
Gene
ENSG00000137699 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
Coordinates
chr11:120128400-120138453:-
Coord C1 exon
chr11:120137228-120138453
Coord A exon
chr11:120128496-120137227
Coord C2 exon
chr11:120128400-120128495
Length
8732 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCTGGCTCTTTCTCTGCAGACG
3' ss Score
10.8
Exon sequences
Seq C1 exon
AGTGAAGCCTGCCCACTTGTGAAGACGGAGACTCCCCGCTCCCCGGATGAGAAGCAAGTGCGTCAGAGGGAAGCAGCCCAACTGGTTGCTGAGTTGTGGAAAATAAGCTGGGGGAGAAAAAACACTTCTTTTAAAAATCAGGTTAGGGATGAATGTGCAGGGCGTGGTTCCTGTGCAATTATCTGCTCTGCTGGCTGCGGGGCTCCCTGCTTCTCCCGGGCCGCTGTGTCAGGCTTGTGCCTGTTGCTCCTCCCCTCCACTCCTCCCCCTCCTCCTCCTCCGCCTCCTCCCCCTCCTCCTCCTCACAGGTGTGTCTCTAGTCCTCGTGGTTGCCTGCCCCACTCCCTGCCGAGACGCCTGCCAGAAAGGTCACCTATCCTGAACCCCAGCAAGCCTGAAACAGCTCAGCCAAGCACCCTGCGATGGAAGCTGCAGATGCCTCCAGGAGCAACGGGTCGAGCCCAGAAGCCAGGGATGCCCGGAGCCCGTCGGGCCCCAGTGGCAGCCTGGAGAATGGCACCAAGGCTGACGGCAAGGATGCCAAGACCACCAACGGGCACGGCGGGGAGGCAGCTGAGGGCAAGAGCCTGGGCAGCGCCCTGAAGCCAGGGGAAGGTAGGAGCGCCCTGTTCGCGGGCAATGAGTGGCGGCGACCCATCATCCAGTTTGTCGAGTCCGGGGACGACAAGAACTCCAACTACTTCAGCATGGACTCTATGGAAGGCAAGAGGTCGCCGTACGCAGGGCTCCAGCTGGGGGCTGCCAAGAAGCCACCCGTTACCTTTGCCGAAAAGGGCGAGCTGCGCAAGTCCATTTTCTCGGAGTCCCGGAAGCCCACGGTGTCCATCATGGAGCCCGGGGAGACCCGGCGGAACAGCTACCCCCGGGCCGACACGGGCCTTTTTTCACGGTCCAAGTCCGGCTCCGAGGAGGTGCTGTGCGACTCCTGCATCGGCAACAAGCAGAAGGCGGTCAAGTCCTGCCTGGTGTGCCAGGCCTCCTTCTGCGAGCTGCATCTCAAGCCCCACCTGGAGGGCGCCGCCTTCCGAGACCACCAGCTGCTCGAGCCCATCCGGGACTTTGAGGCCCGCAAGTGTCCCGTGCATGGCAAGACGATGGAGCTCTTCTGCCAGACCGACCAGACCTGCATCTGCTACCTTTGCATGTTCCAGGAGCACAAGAATCATAGCACCGTGACAGTGGAGGAGGCCAAGGCCGAGAAGGAG
Seq A exon
GTAAGTGCTGGGGCCCCTCCTGCCCCTCCAGGCCTCTCCTCTCTCACCCCACCCCTCCGAACTTCATCTTCTCCACTCGGGCTTCCTCGGGTTTGGGGCTTAAGTTTCTACTGTCCTTGGCTCTTTTAGAAAACATTTATTTCCCCTCATGCCCCCTGTCCCCCCTAATCCCAGCTGGGGATCAGAGGTTGCTCCCCAATCCCCTAAGGTCTCAGGAGACAGGGACATTTTCTAGATGAGCGGATGGAGACTCAGAAAAGGTTGAGGGCCTGACCAAAGTCATAGGATAAATTCGAGTCAGGTTAGAGAGTATGACCCAACTGCATAGACCTCACTTCTGGGCTCTGTGCCTGGCTGAGGTGTTTCTTTCTTCTTCTTCTCCTTCTCCCTCTTCCTCTTCTTCCTCCTCTTCTTCTTCTTTTATTTTTTTTTTTTTTTGCTTTGAAGAAGAGATAATTCCTCCAACCTGAGTCGGACTGGCCCCTGGGGAATGGGTTGTGGGTGAGGAAAGATACTAGAAGGAGAGAATTTTGGGGCCCACTGAAAGGTCCTTCTTGCTGTCTTTGTAGTTTTTATTGTCGTACAGTGGCTTCTTGTTCTAGCTGATCCCCAGCTGGTCTCTTGACTTCCTCCACAGCCTCCTTTATCCTTCTCCCAGCTGGGCCCTGTGTTTTGCGTGTGTGGTTGTGTGTGGACACACATATTCCTGCAGGCGGACACCGTTGGGGAAGTTTGGAGTTTGTGTGTGGATGGCGTGTACGTGTACAGCTAGTCCCTGACTTAGGATGGTTTGATTTACAATGATGTGAAAGTGCTATGCTTTCAGTACAGTATTCCATAAAATCCAACACTTTATTACAAAATAGGCTTTGTAGTAGAAGATTTTGCCAAACTGTCGGCTAATGTAAGTGCTCTGAACAAGTTTAAGGTAAGCTAGGTTAAGCTATGATGCTTGGTAGGCTAGGTGTATTAAAAGCATTTTTGACCTATCACATTTTCAACTTACAATGGGTTTATTGGTAAATAACCCCATCACAAGTTGAGGAGCATCTGTATATGTGTTTATTTTATGTGCACGTGGGTGTTTTTGTGCCTTTGTGGATGTTTGCATGTATTCATATATGTGATACGTAAGTGTGTTTGCATGAGTTCTATGTGACTGTGCCTGTACTTCTATGGGGAGGAGCAGAGGCAAGTGCAGGCTTGTGGATGTAGCATACCTGGGGAAGGTGATTTGGGCAAAGGGCCCAGCTGTGGCCACTGCCCTTTGCCCCACAGATGTGGGGCTCACTCTTCCCTAAGGTACACAGCTTCCTGCTGTGGGTGGCCTTCCTGGGGCAAACCTTCCTGGCCTCCAAAGCAGTGAACTCCACTTTCCTGAAGAGCTTCTGCACACCTCAGATCTGGACAGCAGAGGATTCCTTCCTGCCCAGCCTTCCTGACCAGGAGGAGCTGGTTGATTACTCTTTCCCTTCATCTCTCACCCACACCCCTGGACAGAAAGGGCTGAGGTAGAGAGGGGAACAGACTCACAGATTCCTTCCAGAAGCCTCGTTTGGCCCAGGAAGAAGATGTTTCCAGCTTCCCCCATCTTCTGACCCCAGCGTGGCCTCAGGTTTCATACTGAGAGATATAGATGGGACGGGGCCATGAAACTCATTCTAGGGAGTTTACTTGGGAGGTTAGACAGAACAAGAGGCAATCATCCTCATCACAGCAGCTGAGAAATTGCAGAGCCTCAGACAAGGTTTTAGGAAATGTGACCGAGTTCCAGTCCCAGTTTTTGCCTCTAACTAACTGTAAGGCTGTGAATAAGTCCTTTCCACGCTCAGTCTCATTCTCCCAAGGGGTGAGGCTAGATTGTTGGTTTTCAAATTACCCCACAGAGCCCTGGAATTCTTAGACATGTCTTCGAGGCCTCAGGATGAGGAGGGGGTAAAGAAGTGTCAAGAAGGCGGAGCATTCAGGTTCCCACCTCGACTACAAGCAAAGGACATTCTTATTGATTATCTTCTATGTGGGTTTGGCCTCAAATTTGGTCTCAACCAAGGATATCTCTGCTTAAGCCTGGGCACCCCTGGAAGATGTGGTTCTGGTGGGCAGGAGGGTCTTGGGCAGCCCTATGTGGATGTGCCAGGAGCTCAGAGTTCAGAGTTCGGGTTCTGGCATGGGGGCCGCTGAGGGACTCACAGTTCTTCCTTGAGGGAGGGCTCATGATGTGGGTCAGGAGGCAGGGCTCATACACACAAACAGGACTGGGGAGCGCCCGTCTAGTTACACAGAGCGGCTAGAAGTTAACGTCAAACCGTAGTAGACAGAATGCCGGGCCAACAGAGTATTAGCCACCCCCTCAGTGTCCTCCCTCACCTTGCAGATAGGGACACAGGCACAGAGGAAGGAAGGGGCCTGTCCAAGGTCCTTGTTTGAGGAGGAAGCCCCCTAAGCCCTCTTCCAGTGTTTGAGAGTGCCTCAGGGAAAGGGCCCCAAGGGGATGGGATTGGGATATGTGTGTTTTAGGAGAAAATGCCTGGTCCTCTAAAGTGACTGTGATGGTGGGAGCTTCAGGTAGCCTCCGTGTGTGTGCACACACATGTGCACCTGCAGCATAGGGCTAGGCGGGGAGAAGTGGAGCCAGGAAGCCAGGAGACTGAGCTGGGCACACGGGCTGTCTCGGCCTGGCTCTGCTGGAATGTCACAGGTGGGGGACATTGGCACAGAGCAGGGTTAGTGGGTAGATGGGCCAAAGTGAATGAGCATGCCAGTCCTGGCATCCTTTTGAGGCATCTCCTGCAGACCCAAACATCAGCCCACGCATAGCTGTTTGCAAGTGGCTTTGTTCAGAACCCGTTCCGCAGGCCAGTGGTGAAGGCCCAGGTGATACAGCCTCAGACCTGCCTCGGTTGGTGGTGTGAGGCTACGATGACACCCAGGGCTGTGGGTGCCTGTCTTCTGGGCCTCAGCTCTACCTACAGACTCTGAGCAGAGTCTCTGTTAGAAAAAGATCGCTTGGTGCGGCAACATGACAGCACCTTCCTCTGGTGGTCCCTGGGTCAGCATGTTTCCAGTGCCACCCCAAATGTCACAATAGGCCTCATACATGTCCTCCTGTCTTCCCCTCTGCCACTGAACACTTCCCAGGCTAGGTTAGGTGGGTGAGATTGAAATGTACACATACATCCCTTTCTGTGTCTTATGGCCCTTCCTTCTGCCTATCTCAAGCTTCAGCAGGCCAGGATGTTAAGACCTCCTGGGTGGACGGCTGGCTGCTCTTGGGGGGCCCTGCACTGTCATGGATCTGGCCTGCTCTGGGGTGGCAGCATGACGAGGCGTGTGTGGAGGTCACTCAGCTAGGAGCATTGCTTTGGAGAGGCTTAGCCTCACACCTCCTCCACTCTCTCAACCCCACCATTTGGTTCAGTTCAGTTCTCTCACCACATCTGTGGCTTTGTTTCTCGTCTCATTCCCAATTCTAACACAAAAGCTGAGCCACTGGCTGCTGGGCATGGGCAGCCGCTGGTCCTTGCTTTTCTGAGCAGCGCTGGTCTGCCCAGGAAAGCTCTTTGGGATTCGGGAAGGGGAGCCAGGCTAAAGGCCAGGGTGCCCTGGAGGGGCTGGGCCCACTTTCCCTGGAGACCTTGGTGACTTTGGGGGAGAATGCTTGCCCTGGGACAGGGTGGGTGAGAAAGGAGGTAGGGGGGCCTCTCTGGGTGCTAAGGGGGAAATAACAAAATAAAAGAAGCTTGGAGACAGGAAGCAGGGGAGCAAAGTGACAGGCAGGCAGGAGGCAACCCAGTGTCTGTGGCACACACCTGAGTGCCAGTGCCGGGCCCAGCATGTCCTACTTGTAGATGAAGAAACAAGGTCAAAGTCGTCAAGAGACTTACACAAGTTACAGCACTCAAGAGTGGCAGAGCTGGGATTCCTCTCCGCTATTTTAAGCCTTTTTGTTCCTGTAGGATTGGAAGGGTCTTCTTGAGATCACCGAGTCCAGTGGCTCCCAAACAGCAATCCCCAGACCAGAATCAGCTGGTGAATTGTTGAAACACAGATTCCCAGGCCTTAGCCCAGGAGGTATTTTAAAGGTCTCCCTAGAGAATTCTAATGTGTAGCTGGGTTGGGAATCAGAGATCTAGTCCAATTTCACCACAAGGAAACCAAGGCCCAGGAAGGGGAGGTTCCCACTGTGCCTGCGTCCCCATCTGCAAGGTGAAGGAGGAGACTGAGGGGGGTGCTAACTCTCTGTGGGCCTGGCATTCTGTCTTCTTCCCCACTCTTGGCTGGAGATGGCCAGGGTGATACCTTCCTTGCCCCATCTCACCCCTCCCCTGACCTGAGGCTGTGAGGAGGCAAAAGGAACAGTAAATCTCAGTCAAACAGACTAACTGATCCTGGGCTGTTTTACGTCCGAGTGGAAATGGGGAAATCTATCCAGCATTTCAGATTCTTATCCAGATAATTACCATTTGTCTGAGAGTACAAATTTGGCAATTAACTGGCTCATTTGGCAAATGTCACAGCCGATGGCCCATGTAGTGAATTCAGGCCAGGGGAAGATCATGGCCAGTCCTCTCCTCCCTGGAGCCAGTGCAGGTACACCTATCCGGGTGGGTGCTCAGGTGTGTCTCCACCTGAAGACCACGTCCAGGTTGAGGCACTGCTAGCTGCTGCACCACCCATCTGCTCTCGGGAAAACCTCTGCTCACCCAAGGCTGAAGGATTTCAAGGTTAGGTGGCCCATGCAGGGCCCGTTCCTGGCATCAGAGAGCAAGAGGCAAACAGACAGGTGTGGGAGAAGGGAACAAAGGAGTCATTTAGGGACAGGCCTGGGCAGGGAGGAATGAAGCGGAGAGTAGGAAGTCAGGAGGGAGGTGTGGGCAGGGCGGGACTGTGGGGATCAGAGGCCCTGTCAGCCATCAGGGCCTTCAACCACTTTCTGAGGGAAGAGGGAGAGAGGGAGAGAGAAAGCTGGGGCCTCAGAGGACAATGGGGAGGGTGCTGGGAGGGAAGCGGGGGCAAAAGGAAAGAGATGGAACTGCCAAAGTGCCATCTGCAAGGTGAAGGGAGCATGGGAGGGCTTAGGCCAGCAGGAGTGAAGGGGAAGGACGATGCCACAGAAGACACACAGGACAGCCTAGTGCCACCACCTCTAGGTGCGCCTCTTGAAGCACAGAATAGGATCTGAGTCCTGTTGTTGAAGCTTGGCCTTACCGCTTTCCAACTGTGAGAACTCAGGCAAGCTGTGTAATCTTTATAGGCCTCGGTTTTCACACCTGTGAAGTCGGAGGGATAATGCCACTTACCTCCACAGGAGGCTTTTGCTGGTTAAAGGAGAAAAGTCCTGGCACATACTAGATGCTCAGTAATCAACACTGCCTTCCTTCCCTCTCCTAGTGTTGAAGGAGAGCCCAGCGACTTTTAAACCTTCCCATGTTATATTACTTCCTATACAGGAAAAATTGCCAAGAGCTGAACAGACACAAGGTGCATCCCTAGCTGTCACCCCAAATGCTCCTCCCCCGACAGGGTAGGACTCATCCCAGAGGTGAGAAAGGACCATTCTAGCAGCACAGAGTTCCCAGTCCATGGGAACTCCAAGAGCCTGCTGTGTCCTGCCGGTCTGGTCTTGCAAGACATGCTGTGGGAACAAGGCCCCTTCCCAGCCTGTGTCCTACTTCTTCAGTGCCCCAAAGAAATAGGAGGCCAAGTCTCTCCTCCACCCTGACCGACTCTTCTGCCCACAGCTGCAGACAGTCTCCCCTTCTGGCCCTGCCCTCACAGGTTTCCACATCATCCGCCAACACCTCTGGCTCTACTCTCCACCCCTCGGTGCTCAACTAGCCCTATTGCCCTCTTCCCTTGTTCTCTTACACAGGATGGACTCCTGAGGGACTGGCCTCTCCCTGCCCTTGGCCTAGACACTTCTTTGTTCTAATCCCCATTGAATTCTGCATCCCTGAACTCACTATCTCCTTCGTCTGTCTTGGCCAATGAATCCACGCTCACCTGGGGAGACCTTTCCTCCTCTGCAGCCCCAACCATGCAGCCCTCACCTGGTCTCCCTGTGCACTTCTGCTCACTCCAGGCACTCAACTCCTGGCCTTCACCTTCTCTGGTCAGACCTTCTGCCACTTGCAGGTGGTTAGTCCACCCTCATCCCCTTTTGTCCTCCTTCATTTCCACCAGTGTCCTCCAATCTTCAATTATCCATGAGCTACGCTTCCCTCTTGCATTCAGCCCAGTGTCTTGACCTCACCAGCCTCTCTATGCACTCCCTACTGTTCACTCTGTGTCCGGACAGTGTACACACTTCATCTGGATCCCAATCTGACAGCGTACACTATCCTCACCACTGAACACCACCAACCCCTCACCTGACCACATCTGCTGTGCTCCTCACTTGCCAATGCCGGGCCCACCTGCCCACCATGCTGCACACACTGCTCCGAGCATGGTGTGAGTGAAAGCACCCAGCCTGGCCCCTGGTCCATGGAAGTTGCCCACACAATAGTGATGATGGGAACCATTGCTCAGACAGTGCTCACGCTGTGCCAAATGCTTTCTGGGGGCTTCACTCCCAATCCCAGGGCATCCCACAGCTTCCCTGGAAGGCAGGTCCTCTTCCTGCTCCCATGGACCAGACAGGGCTACTGAGGCACAGAGAAGCCAGGCAACTTTCAGAGGCACCTGCTGTCCTGTGCTCCTGGGGAGCCCCCTCTGAGCCCACCATTGCTCATTTCATGGAAGGGCTGCCCATCTCCTATTTGAGACAGGACTTTTACCAGCGCTGGGCCCTGGCCTATGGTGGGAGGGATTGTGTTTTGTTCTCTGCTTTCCTTTCCATCAGACCTTGTCCTCGGGGTGGTAAGGTGGGGTGAGGAACCCAGGTGCCAACTCCTCCATCACTGAGCTGGGTCAGGAGGTTGGGGGTCTCCAGCTGTTCCCTGACCTTGGACTTCACTCAGGAGTTCTCCAGGGATGAGAAAGGTGCTTCGGACAGACCCCCAGTCCACTCTCTTGGACTCTTCCTCACAGCTCAGATCTGCTTGCCAAATCCAGCCTCCTAAGAGGCCTTTGGGGCTGTGGGATCTGCCAGCCTGTGTTTCCTGGGCTCTTGGGCTCTGCATCGTCAGAGAGTGTGAGGGTCGAGTTTCTGCCATTACAGTGGGCCTGCTTTCTCTGTTTTCCACTCTCTCACCACCTTATTTAGTGGCTGCTGGCTTCTCTCCAGACTTTTTTCCAGAGATGGGGCCAAATCTCCATCCTCATCTCCTTAGGTCCTCTTTTCCATCTCTGGTGATGGTATTTTCCATGCTATGGCATTTCCGGCCGTTTGCTGGTGGGGCAAATGCTACTGAGAACAACTCTGAATCTCCCTGCCTGGAGAGTCCAGGAATGTGGTGGTGGGGGCGGGGAGGCCAGGGATTCAAGGACTCTCTGGGAAGCTCTGTGGCTCTTGCCCCATGCCTTCCCCACCCTCCGGGCACCTTTTCCAGGAAAGCCAGGGAAGCTCTATCTGCCATCGGATCCACTTCCCCGGGTGCCTGCAGGAGGTCCCCTGTTAGCACTTCCTTGGCCCGGTGGGGCGTTCAGAAGGTGTGCCGCATGGTGTTGCATGTGCCCAGGTGCTCATGACTCCTGGCTGATGGGACTCCCATTCCTAGAGGTTTGTGGCATCCTCACCTTGACTATTCTTTTGGGCTCCGCAAGGTGATGGCCAGAGAAAGGGGTGGGACTCTGCATTCAAAACCCAGTGGTAGTGGGGAGATCTGGAGCAATCCAAGGCTCTCTTGGATGCTTTGTTCTGTCAGGTGGAGATCATCCACCTATTGTCCATGCTAGAAGGGGCTTTGAGTGTCCTACAGGACAGCCCAGCAGAACAGAGGCTTGGCTGGATGGGATTGGCCTTAGCTTCATGCCTCTCCTTTTGTCTCTATTGTGGCTGCTTTTCAGAGAAGGGCATTTCCCCACATGAAAGGTGAGTATGGGAGTGAAAGCTAATGTCCCAGTGTGCTACTGATACAACCTCTTCCTAAACCACCCCAGACCCCAACAGTCTGTGTCCTCTTCCTGAGCAGGGGTCCCTACAACCTCTTCTTCCACTCTACACTGCCTTCCTCTCCAGCCTTCTCCTTCCCCAGAGCCCCTGGGTAAAAGTCTCCGTCTTGCCAAAACTGCAGAATGCCTTCCCTTTCCCATAAACAGGTTTTATAGCTGTGCCTGCCCAGACGGAGTCCACGCCGGCGGCAACCCTGGCTGCTGCTTGCAACACAGCCCTACGTCATGCCATAGAAACGCTGCACACTGTTACTGCCACGAGACACTCCCTGGGCTGGGCTGGGCTGAGCTGGGCTGGATCCCCTTCCTTTCTCTTCCCATTGTCCCCAGGTCCACTGAAAAGGGCAAGCACCCTGTAAATGAGTTTCCCTCCTGCTCTTGCTGGGTGGAGGAGATAGGCAGAGGTTTAGCCCTTAAAAAGACATGGCTAGGATATCCAGCCCTAGTGGCCTGAGAATACAGCAAGATGGTATTTAACTTACTGCTAGATCCTTGGCGACTGGCATGGTGCCTGGCATATCCGAGGTCCTGATGAATGTTTGCTGAATGAAGAGCTGAATAGATGAGTGATGAGCCCTGGCTGCGAGTGTGCCCCCTGAGTGGAGCCGCTCCCTGGTTCTCTGGTTCTCTTCCATCTCCTCCCCCTGACTTCTCCAATCCTGGCTCTTTCTCTGCAG
Seq C2 exon
ACGGAGCTGTCATTGCAAAAGGAGCAGCTGCAGCTCAAGATCATTGAGATTGAGGATGAAGCTGAGAAGTGGCAGAAGGAGAAGGACCGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137699:ENST00000341846:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains