DreINT0070355 @ danRer10
Intron Retention
Gene
ENSDARG00000090431 | ftr04
Description
finTRIM family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-226]
Coordinates
chr2:59039577-59046572:-
Coord C1 exon
chr2:59046438-59046572
Coord A exon
chr2:59039751-59046437
Coord C2 exon
chr2:59039577-59039750
Length
6687 bp
Sequences
Splice sites
5' ss Seq
TTTCACACT
5' ss Score
-29.05
3' ss Seq
CTCATACACACACTCCACACCAC
3' ss Score
-2.87
Exon sequences
Seq C1 exon
AGTCGGCTGAGGGAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGGTGAGTTTGAGCAGAAGAACAGCAGCTGAAGAGGCCTTT
Seq A exon
CACACTCCAATGCTTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTCTGACAGCGCTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGGTGACACACAGGACAGTGGAAGAGCATGTGGAGCAGAGATTGTGTTTGTGTGTCTTCAGCTGCTGTTTCTGTTGTGTCTGTGTAGAGTTTGCAGTCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCATCACTGTCAGCTTTCCACTCGATTTTGATGATATTGTTAAATCTGTGTCTCGTCTGAGAGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTAGCAGAGGTCAGATTTATATTTCCTGACATGTTTCAGATGATTTTAAATGTATTTGTATTGTTTAACAATGTTTACTGTAAATCATCTGTTTGTCTCCACAGTGAGCAGCATTAGCAGGATTCCCGCTCCTGAACCACAGACCCGTGAGCAGTTCCTCCAGTGTAAGTGACTCTGATCATACTGAACATTAAAGATTATAGTTATATATTGTGTTGGATTCCTTCATATGAGGCAGAGAGTCTCTGATGGCTGTAATGTGTTTTATTCTGGAAACAGCAGAAACAGTGAAAACTAGAAGTAAACACACAAATCAGCACAAAGCAGATTGATAATGAACTCTTACACATTTACAGTTCTGTAGCGGATTAGCTCAAAGGGAAGAAGATTCATTTGAACAGGGCTTCAAAAGAATCGACTCTTTCAATCCGAATCAACGAATCGTTCAGCAATCATTCAAACAGAAAGTTGACTTTAATTACAGCTATTGCTATCAAAACAAAAACCCATTTATGTTTAAGCACGGTAACAAGATCAAAGTTTAAGACATTAGATTCATAAACATGCACCGGCACCTTTCTTCATACAAAATGACTCTTTATTGACTAATCTAACAGAAACTAACACAAACACACATTCATACAAGTGTAGAGAAGAGTAAAGGAAGTAGAATAAGAGTTTGAGAGAGTGTAATGATGGAAAACCTCAGATTTATGTTAGACCGAACCAATAATAAGTCTCTTTAGGGTTGTATTTAGTTTACACCAGTTCAGATGGAAGTGTTAAGCCTGATTTATACTTCTGTGTCAGGTGACCGGCGTAACCCACGGCGCATGCAACGAGCGTGGCTGTGCATTTATACTTCTGCACGCTGTCTCTGTCGGTCTGCATTAACACTTCCGAAACGCTAGTTGGCAGTGAGGTGTAAATTTTCCTCTGTGTCGAGTTTCTTCGCTGCTTTATTGCTTTTCCTGAACACTTCCGGGATATACAAGTGGCTCAAACTCGCTCATTTTGAGGCAGGAACCGGCGGACGTGCAGCAACTTTAACTATGAGGTAAACACAAAACAAAACTTTCCATCAGGAGCTCCTTCACTGGACTCCACACTTGTAAACAATCGCTCGCAACATTCGCGCGGCTCTAGGTCCCGCCCAGACTCGTCAGCGCTTCCAAGCCGACCAATCACAGAGCTTACGCTACACGTCATTGCGACGTGTAGTTACATTTTTTGAGAGGTGCACGTCAGTGACGGCGACGGCCACGGCGAAGGGCTATGCGTCAGTGCCGTAGCATACGCCGGCGTTTGACGCAGGAGTATAAATCAGCCTTCACTTGCGTTCCCTCTGTGATGTGAAGAAACTCCCTCTTCAGCACGTGGCTAGCTGGTTGCTCTTTGTCCTCGCGAGGCTTGGAGTGGGGTTGAGGCGGTCGTTTCAAGTTTTTTTTTTTTTTTATGTTTTTTTTATACATTGTGAAACATTACAAAAATTTACAAAGACATAAACATGTAACAATAAGCAAATACACTGAAGAGTATTTTGAGCAAATAGTAATAATAAAAATAAATAAACAATAATAAATAAAAATAAGATAATAAAATAACTAGAACCTAAAGTTTATTGATAAACTTTGATGTTGGCTTGAGAAAGCCAACGTGACTGCGCTAGGACTGGGAATGGCAGTTGGCAGGAAGCACGGCGGTGGTTGCTAAGTGGTTGCTAGGCAGTTGCTAAAACAATTATGGCATTGTTAGGTGGTTGCTAAGCAGTTGCTAAATGGCAATGCTCGTGTACATGTATGATCAAATGCTAACACTTAGTGGGTATTTCTAGCATATGTTATTGCATTTAGAAAATCATTCATAGCATGTAGCTAATCGTTATTAGCACTTGGCTTCCATTATCATTGTTACCATGCATAGTACACAGGAAGTCCCATTTGCTAGCATGAGTCAAACAAGCCAATGCCCAGGTCCCTACGATGTTATGATGTAGAGATATTGCTGTTTTTAAATGGTTGCTAGGTTATAATGTTTTGTTGCTCTGGGGACATTTGACAGGTTAGTGATGATACATCAAAGCTTCTTGGCAATATGAGTGATCTTAATCAACCCCGATGTTTCTATGACAGTCTTTATGAGTGTCAAAAACTGGACTTGAACATTATGTATTCCTGGTGTTGGGTTGCGGCTGGAAGGGCATTCGCTGTGTAAAACAAATGCTGGATAAATTGGCGGTTCATTCCGTTGTGGCGACCCCTGATTATTAAAGGGACTAAGGGAATGAACATTATGTAAAAATGGCTTGCCGTATTTTTTGGAAAATACAATGCTTAATAAGTGTGAAAGTGATACATGCAAAAATGGCTTGCCATATCATTAAAAAATGTGGAGTTTAAGTCAAAAATGGTTTGCCATATCAGTAAAAAATATGGAGTTTAAGTCAAAAATGGCTTGCCATATTTTGAGAAAAATAATGCTTAAAAATTATTTATTGGAAAACTATAAGTCTGATAAACCTTAAAGATATAGCAACAAAATCTAATGCATCTAAATACAGCTTTTGGCCAAATTTGGGGCTTGTATAATTTTTTTTTTTATGCTCGGATTATAAAAATGTAATATTTAACATTTTTTATTAAAAAAACAATAAGTCTTATAGGCATGAGGAGATATAGCAACAATCTTGAATGCAGAAGGCACATTTTGACCACATTTGGGCCTTGTGGCATGAACGGCCTAGGAGGAGATACGTTTGTTTTCAAGGACAGAGTAGCATAACAGTATGTTGGCTTTCTCAAGCCAACATAAATAGATAAATAAAATAAAAAACAACAACACTAGTGCAATCTTACATACATAAAAAACAAGTCTACTATGTGTTGACCAGAAGTAGTTTCCCATAAAAGCTGGGCATTAGGGGGTGGGGACTCAATCAGAAGGAGCAGGGTCAAGCTGAAGAGTTTGGACATATTTGTAAAGGGGCTCCCATAAATTAATAAAAATAGTGCTAGTTCGGTGAAGAGAGTACCTAATTTTTTCTAATTTCATAAAATAAAGAACATTTCTTATCCAACAAGAGTGAGAAGGAGGGTGAGGGCTCTTCCAGTTCAGAAGAATTAATCGCCTAGCCTACAAAATGTTTACAAAATGAGAGGGTAAAGTGTCTCTCTCCCGGGACAGCATGCCAAACTTGCTTATAATCAATCATCAGCTAAGTGTGAACTCTTGAAACTTCTCTTTAACATCGTTTTTGAGTATGTTGTGTAACCATTCATGCATTTATTTTCCTGCCATTAATTTCTTAAGGCCACAATACCAATGTGTATTGACTAGTATATAAGGCTTATAGAAATTATAATCCGTCTGGAGCTAGCAGAACTCTGTCCAAAAATGTATAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATAGATGTATACAAACGACGTCCTACATCTTTAAAAAAATGTATATATTTTCTTACAAAAGACAATGCTCCAACTTAATATATATAAGCTACAGAAAAATGTGAGGGGTGCAGAAAGAGAAAGGGAGAAAAACACGAGATTTCTATGGGAGATTCTAACTCGCTCCGTTGTTCTTTAATGACGCACTGTCCACTATGCTATTGCCGCGCTCTGAATAATCTGTGTCATGATACTCAGTGGTTTATGAGCTGGGCCAGACGGAATCTGCGGACATTTTTTGCTATTTCTGCTGAGAATTTTGGTTAAAATCTGCGGATTTTTGCAAAATTATTTTTGGAGTATCCAGCGGAGTATCATAACTAAAACCTTAATATATTAAATAAAAAGTAACAAATTACTGAATAAAAATGGAATAAATTCAGATTTACACATTTACTCAAGTAAATAAACAGAATTAATGATGGGCTAAAAATCTGCAGAAATCTGAGCGCGCAGATTCCGTGTGGGCCTAGTTATGACCAAGGAACTGTACTGAAGTTTATAAAACAGTTCAGTGCCAGGCATACTGTACAGATGGTCTTACACGCTATTGCCACATTGTACAGTTGCTTAAAATCCCCTGACACGAATACAAAGAGCTGCACTGAATGTTGTCTATGATAAGAGCAGACCCGCACTGTCACATTTGATTTCAAAAGGTTTGTTAAATGCATTACCCATTCTTTTGAAAAATGACCACGTTCACTCAAATATACATTTGGTTGTGAAAAGAACAATACTTATAACCCTCTCACAACAAAAGAACATGTGTCTGTGCTTCTACGTCCATCAAAATTCTCATCAAAAGAGCACGCAATACTCAGTAAACTCAGAAACAGACAAACTCTGGAACAGAGCAACTCTCTGAAGATAACCTGCTCCGGAGTAAGTCATCTTCAGAAAGTAAGTTGCTTTGTCTACTTAACATACCCCAGAAGTTACCTCTGATTTTGGAACCAAGGCTGAGGTTATCCACTTACTCTCAAGCTTACCCGGGTATGTCACATAACCTGCTTTCTGGAATTCCACCCTGGTTTTGCGGCACATTAAACTTAACTAGACTCTCAGCGGAAAAGAAATAAAGAAACGTATCAGAGATGGGAATGCCTGAGCTGTGCGATTAACCCATTTTGTTTGGGTCCCCGTCTGCTCCCTGGAGTCCTCTGGGTTCTTTCGCTAGACCTGGGCATTCTAGCTCGGGTGATCTTCTCTGGCCTCTGGTTTCCTCTGTTTCTGGTAGTTTCTCTTCTTTCTTGGAGGTTTTTCTGTTTCTGGAGGTTTCTCTTCTTTCTCTTCTTAGGTTTCTCTGTTTCCCTGGTTGGTGGCTTTAGGCCAGGGGTGTCAAACTCAATTCCTGGAGGGCCGAAGCCCAGCACAGTTTAGTTCCAACCCTGCTCCAACACACTTACCTGTAGGTTTCAAACAAGGCTGAAGGACTCAATTAGTTTGATCAGGTGTGTTTAATTAGGGTTGGAACTAAACTGTGCAGAGCTGCCGCCCTTTTGGAACTGAGTTTGACACCTGTGCTTTAGGTAATATTTGAATATCTGAATATATATTCTGTGCAAAATTCTTTATAGATATCCAGTCCTTTGTAACGGGGGTCACACAAAAAAATAATAAAATATGTACACCTACTCAAGTAACCCAAACAGTTTTATATGTCTTAACACTAAAATGAAAAAAATAATAATAATTATTACTCCGATGAGGTTCGAACTTATGTTGGCGGTGTCGTAACGCAAGTGCTGACCACTGGATCACAATTGCGCAGTTATACTAGTGTGTTTGAAAACAAATAAGTATTGCACTATAGGTCTGCATGGGACTAAATTTTGTATCCCGCTCCCGCCCGCACCTGACAGGTTTTAGTCTGAACCCAACCTACTCCTTTTACTACCTTCCACGCCCGTTCCCGCTAATGAGCAGGAGGGGAACAAAACTGAAAACCACCCAGCTATACAGAGTCCAGAGTCCCAAGTTTCCTGGTTTGGGGTTGAACATGTACTGAAACATTCATAGTTCTTGTTTCTTAATCAGCAAAAGTGCAAATAATATTAGAGTAAAGACATTCTGATGAACTGAAACAGATCAATAATAATACAGTCATGATTTCATTATTGTCACTCAGAAATTCATTGATATTTTTCCTGATTTTTATCTTCATCAGATTCTCAACAGTTCACTTTGGATCCAAACACAGTCAATAACTGGCTGGTTCTGTCTGAAGGAAACACAGCGGTGGAAAATAAAGGTTCAGTCCAGCCGTATCCTGATCATCCAGACAGATTTGATTATTGGCGTCAGGTGTTGTGTAGAGAGAGTGTGTGTGGACGCTCTTACTGGGAGCTGGAGTGGAGCGGTGCACGTGTGTTTCTCTCAGTGTCATATAAGAGCATCAAGAGAAAAGGACGGGGTAATGAGTGTCTGTTTGGACGCAATGCTCAGTCCTGGAGTTTGTCCTGCTCTGCTGAGAGTTTCTCATTCAGGCATAATAACAAAAACACTGAACTCCCTAAACCCTCCGTCAGCTGCTCTAGAATAGGAGTGTATGTGGATCACAGTGCAGGAACTCTGTCCTTCTACAGCGTCTCTGACACAACAATGAGCCTCATACACACACTCCACAC
Seq C2 exon
CACATTCACACACACAAACACACTCTGTCCTGGATTCTATGTTTATAAAGGTTCAAAAGTGAAGCTCTGTGATCTGACAGTGTAGATGATGCAGATCCTCCGTGTACAATAATGTGGAAAATACTCCAAATATCAGTCTTGCTTTATTTGTGATGTTTATAATAAACTGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090431:ENSDART00000113700:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF039618=DUF342=FE(28.9=100),PF041569=IncA=FE(54.3=100),PF039389=OmpH=FE(64.7=100)
A:
NA
C2:
PF039618=DUF342=PD(5.9=56.2),PF041569=IncA=PD(7.4=37.5),PF039389=OmpH=PD(8.8=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]