BtaINT0152664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009419 | TRIM29
Description
Bos taurus tripartite motif containing 29 (TRIM29), mRNA. [Source:RefSeq mRNA;Acc:NM_001099379]
Coordinates
chr15:31229995-31240050:-
Coord C1 exon
chr15:31239421-31240050
Coord A exon
chr15:31230091-31239420
Coord C2 exon
chr15:31229995-31230090
Length
9330 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCCCGGCTCCTTCCCTACAGACA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GGCGCCCTGAAGCTGTCGAAGCAGAGCTCCCTGTTCTCCGGCAGCGAGTGGCGGCGGCCCATCATCCAGTTTGTCGAGTCGGTGGATGACAAGGGCTCCAGCTACTTCAGCATGGACTCTGGGGAAGGCAGGAGGTCGCCCTATGCCGGGCTCCAGCTGGGGGCTGCCAAGAAGCCTCCTGTCACCTTTGCCGAGAAGGGGGAGCCGCGCAGATCCATATTCTCCGAGCCCCGGAAGCCCTCGGTGTCCATCGTGGAGCCCGGGGATATCCGGCGGAACAGCTACCCCCGGGGCGACTCCAGCACCCTCCTGCGCTCCAAGTCGGGCTCCGAGGAGGTCCTGTGTGACTCGTGCATCGGCAACAAGCAGAAGGCCGTCAAGTCCTGCCTGGTGTGCCAGGCCTCCTTCTGCGAGCTGCACCTCAAGCCCCACCTGGAGGGCGCCGCCTTCCGTGACCACCAGCTGCTCGAGCCCATCCGGGACTTCGAGGCCCGCAAGTGCCCCCTGCACGGCAAGACCATGGAGCTCTTCTGTCAGACAGACCAGACCTGTATCTGCTACCTCTGCATGTTCCAGGAGCACAAGAACCATAGCACCGTGACCGTGGAAGAGGCCAAGGCCGAGAAGGAG
Seq A exon
GTAAGAGCTGGCCTCCTCGCAGTACGCTCCCACCTCATTTTCTCCACTGGGCGCTCCCAGGGTCTGGGGCTTACCTCTCTGCTGTTCCTGGTTCTTTCAGAAAACAGTTCTTTCCCCTCCTACCCCCAGACCGGGAGTCAGAGATGGTTCCCCAATCCTTAAGGCCTCAGGAGTCAAGTCATCTCCTAAATGAACAAAGAGGGGCTCAGCAAAGATGGGGGCCTTGGCCAAGGTCATAGGATAAATTCAAGTCAGGCCAGGAAATCAGCATTCCATCCGGGGCTCTCTGCCTGGCTGGGTGCTTCTTCCTTCCTTTCTACTTAGGTGCTAAGTCACTCAGTTGTGTCCAACTCTTTGTGACTCCATGGACTGTAGCCCACCAGGCTCCTCTATCCATGGAATTATCCAGGCAAGAATACTGGAGTGGGTTGCCATTGCTTTCTCCAGGGGATCTTCCCCACCCAGGGGTCAAACCTGGGTCTTCTGCCTTGCAGGCAGATTCTTTAGTATCTGAGCCACTGGGAAAGCCACCTCTTTCTATTTAAGGGAGAGAGAATTCTTCCTAGCTGAGGAGGACTGGCTCGTGGGGATTAGTCATGGGTGAGGAGGGGGGAATTTGGGGACCACATCAAGACCCTTTCTTCCCTGACCTCGGAGTTGGTCTCTGTAGGACAGTGGCTCCTTCTTGTTCTGTCTGATCCCCTAGCCAGTCTTAACACGCCCAGCAGCTTCCTTTATCCTTCCCTCAGCTGGACCCTCAGTGCTTTGTGTGTGTGGCCATTGCCTAGTGAGGGTTGGAGTCGGTGGGGAGGGGTGTACATATGTGTGTGTGTGTGTTATATGCATGTGGTGTTTATATCTGCACATGGATGTTTGCATATGACTGTACATGTGGCAGGTAAGTGTGTTTGCATGCCTTCTGTGTACATGATTCTGCCTGTGCTTCTGCGGGGAGGAGCAGAGGCGTGTGGAGGCTTGTGAATGTGGTACATCTTTCTCCTGGAGAGGGTGTGCTGGGATAAGGGCTCATCTGTGGCTCCACAGATGCTGGGACTGCTCCCCCCTCAACAACACAGTCCCCTGACGTGGGGTGGCCAGGGGTCAGCCGGGGTCAGCCATGCTCATTGTCAAGGCAGGGGACTCTGCTTTCTGCACCCCACAGAATGGGGCAGCACAGCCCCCCCTCTGTGCCCAGCCTTCTTGACCTGAAGTCTGTGGGTCACTCTTTCCTACCCATACTCCTGGGCAGGAGAGACGAGTCAGAGATGACAAAAGACTCAAAGAGCCTTTTCAGGAGCCTCATTTGGCCCAGGAAAAAAAGGTGGTCCAAGTCTCCCTAACTCCCTGACCCCAGCCTGGCTTCAGGCTTCAGACAGGGAGATGGAGATGGGGCAGGGGCCATGGATCTCCTCCAGGATTTGACTTACGGAATCAAAACAGAATGCGGGTTAATTATCCTCAACCACCACAACCAAGAAATTGCAGAGCCCCAGGCTGGGTTTTAGGAGACCTCAGCTCCAGTTCTAGTTTTTCCTCGAACCAGCTGTAAGACAGGGACCAAGTCCCTTATGTTCTCTCAGGCTTGGTTTCCCTTCCCGTGAAACTAAGGGATTGGACTAGATTGGAAGTTTTCAAATGACCCCCTGGAGCCTGAAGATTCTTAGGAATGTCTGAGACGTCAGGGATGAGGAGGGGGGCAAACTGATGCCAAGAAGGCAGGGACCCCGGTTCCTATCGCTTCTGCAAGCAGCTGTGCCATGCTCACGCTCAGTCATGTCCGAATCTTTGCAACCCTTTGGAAGTAGACCACCAGGCTCTTCTGTCCATGGGATTTTCCAGCACCTGCCCACTCCAGTACTGTTGACTGGAGAATCCCATGGAAGTAGAGCCTGGTGGGCTATAGTCCACGGGGTCACAGAAGAGTCGGACACAACTTAGTGACTGAACAACAACAACAACTCTTATTTATCTGTTATATGTGTAGGGCTTGGTCCCAAATTTTATTTGAAACCAGGGTATCTCCACTTAAGAAAAGCCTGAGTGCCCCAGAGGACAGGACAGTCTTGGGCAGTTTTCTCTGGCAGTACCTGGGACTTGGAGTTCATGCTCTAGGGCTCGTGATGTAGGTCAAGAGGCAGAGCTCAGACGCACAAACCAGTCTGGGGTGCATCCGCCTAGTTACACAGCAGTGGCTGTAAGTAAACATCAACTTGCAGAGGACAGAATGCTAGGCTGGATGGAGAATGAGCAATCTTGCCATCTCCTCTCCACCTTGCATGGGGACACAGGCCCAGAGGAAGGAAGGGACCTGTCCAGGCTCAGTGCTTAAGGAATAAGCCCCCTGAGTCCTCTTTCAGTGTCTGAGAGCAACTGGGGGAAGGGGGATGGGATTCAGGAGGCGTGTGCCTTACAGGGGCTCAGGGGGAAATGTCTGATCCACTGGAGCGACTTAAATGGTGGGAGCTTCAGACTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTTGCAGCATAGGTAGGCAGGGAAGGGTGGTGCTGAGCACCTGAGTGGAGACAGAGATGGAGTGGAGCTCTTTGTCCAAGCCTAGCCCCACTGGAATGTCAGACACTGGGGGCGTTGGCACAGAGCAACCTTAGGTAGGTTGACGGATCAAAGTGAATGAGCCTGTCAGCCCTGACATCTTCAGAGGCAGCCCCTGCAGACCCAAACATCAGCCTACACACAACTTTTTTTTGCAAGAAGTCCTGTCCAGAACCCGTTCTGCAGGCTAGTAGGTGAGGCCCCTGATGAGGCCATCACTGATCTATCATGGTTTCTTGCATGAGACTGTAGACCACACCCCGGGCTGCAGTGCGTTTGGGCCTCCCTCTCTGCAGAATCTGAGCAGAGGTGGTGTTGGAAAAAGGCTACTCAGCGTGCCGCCAACATGACAGGCCTTCCTCTGCCGACCCAAGATCAGAAGGTTTCCAGTTCCACTCTGAATGTCGCAAGGAGGGTCCACAGATGTCCTGAGCTGCACTCCTCTGCCTCTGGCTTAGACTGATGAGATTTCTGTTGTTGTTTAGTTGCTAAGTCGTGTCTGACTCTTTTGTGACCCCATGGATGGTAGCCCCCCAGGCTCCACTGTCCACGGGATTTCCAAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTGCTCCAGGGGATCTTCCCGACCCAGGGATCAAACCCACATCTCTTACGTCTGTTGCATTGGCAGGCGGGTTCTTTACCACTAGCACCAACTGGGAAGCCCTTGCAATGTACAAATCTATCTTTTTCTGTGTCTCAGGGCCTGTCTTCTGTCTCTCCCGAGTACCTTCTGCTGCATCGGGTCAGAGTGGAGGATTCCTGGCCACGACTCTTGCTGCAGGGTAGTCTGCCATTTTGTGGGTTCTCTGGGCTCTAGGTCAGCAGTCTGGCCAGGCAATGGGGAGGAGCACTCACGACAAGCATTGCTCTGGAGGGCGAGGTCCTAACTCAGTAGTGCAGCTCAGATTCAACACCTCGGCCACTCTCCTGACGCCGTCACTTGGCTCAGCACCTTTCTGCCGCCAGTGTCTGTGGCTTTGCCTCTGGTCTTGTTGCCCAGTTTTTTCATGAAGTCTGAGCTGCCAGGCTGCTGGCCATGGGCAACTGCTGGTCTTTGAGCTTTGGGAGATGTGCTGGTCTGGGCTTTGGGGCTCTCTGGGTGGACCACCATGACCATGGACAAAGAGGAGCCAGGTGGCTAAAGGCCTGGAATGGGGTTGGGGGGTGTCTGGGACCACTCTTCTTGGAGATATTGGGGGGAAAACTGCCCCTGGAAAGGGTGAGTGAGAAAGGAGGTGGGATGACCTCTGTGGGTGCTGAGGAGGAAAGGACCAAATGAGAGAAGTATAGAGATAGGACGTGGAGAAAGAGAGTGCCAGGCAGGAGGGCAGGAGATGGCTCATCTTTTTGGAGTACATTGATGTGCCAGGCGCTGGCCTGGGCATTTACACTGTTACTCCTGACAACAGTCCCACGGATGGGAATATCTGCACCTATATTATAGGTGACAAAATGGGATCTGAAATGCCGAGAGACTTAACCAGTGTTACAGCGCTGGGGGTGGCTGAGCTGGGATTCAAACTCAGTGTGGCCATAGCCCAGCCTGTTCTCTCTCACCATTTTACATGGTTGAGGCCATGTAACCATGTAACATTTTAAATGTTGTTTTCATAGGCTTGGCAGAGGCTCCTTGGGGTTCCCTGGGAGGTTCTGGTTCAGGGTATGAGACCTGCATTTCTAAGTCACTCTCAGGGCTTCTAATGTGTAGCCAGGCTGGAAATCAGGAACCTAGTCCAGTTTTATCAGGAAGAAATGGAGGCCTGGGAGGTGGGGTAACTTCTCAAGGGCCCACTGCTGGTCTGGAATCCGCTTGAATGATGCTCTTCCCTGCCCCCCATCTTGCCCCTTCTGCATCCTGACGTCCAAGGAAGCAGGAGGAACGGTGAGTCCCAACGAAGCCGACGAATACTGGGCTGGTTGACATCTGGGTGGGAATGGGGAAATCTATCCAGCATTTCAGATTCTTATCCAGATAATTACCATTTGTCTGGAAGTACAAATTTGGCAATTAACTGGCTCATTTGGCAAATGTCATAGCCAATGGCCCACGTGGTTAATTCAGACCAGAGGGGCCCCATTTCCCCTTCCCTGGGGGCAGCACAGGCACACCTGTCCAGGTGAGTGCTCAGATGTGTCTGCACCTGGAGGCCCTGTCTGTCCCGGCCGAGGCACCACCAGCTGCTGGCCACCACTTTGCTCCCCCAAGGCCGGAAGGATTTCAAGGCTGGGTGGCCTACGCAGGGCCCGTCCCAGCCACAGAGCGAGAGGCAACAGGCGGAGTGTGGGAGAAGGGAACAAAGAAGGCATTTAGGAGCAGGTCTGGGCAAGGCAGAGCGGGTGAGCAGAAGGAAGTCAGAGGGAGGTGTAGACAGGGTGGAGCCGACAGAAGCTGAGGCCCCATCGGACATCAGGGGATTTAATCAGATTCCTAGGGAGGAGGGAAGGGCTTCCCAGGTGATGCTAGTGGTAAAGAACCCACCACCTGCCATGCAGAAGGCTTGAGAGACACAGGTTTGATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGACATGGCAACCCACTCCAATATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCTTGGTAGGCTAGAGTCCATAGGGTCGCAAAGAGTCGCACACGACTGAAATGACTTAGCAAGCCCAGGGAGGAGAAGGAGAAAGCGGGGCCTTAGGGGGCGATGGGGAGGTGTGGGGAGGACAGGGAGAGAGGCAGAATCCATGAATTGCCCTGTCTATGAGGTAGCGGGTGGGGAGGCCTGGCACTACGACGTCCTGGGTGATACAGAGAACAGCCCAGGAGTTGAGGCCATGTAACCGAGCTGAGTCCTGTCTCTGTGTCGTGGTCCTCCCATTTCCTCACTGGGAGAACTCAGGCAAGCTCCTCAATCTGCCTCGGCCTTGGTTTCTGTATCTGTACAATGGGGACAACACGGCTTACCTCCCCAGGGGGCTTTTGAGATGAAAGGAGAAATGCAGACACACAGTGGATGTTCAGCAAAGCAGTTAGGGTCCTTCCTTCTATGGTGGCAGGAGAACCCAGGATTTCAGAACCTTCATATGTCATTGTTTTCTGACTCCTGCCTCATCTGGCTTTTGTGCAGCCTGGCCAGAGGGAAAAATTGCCAAGGACTAAATGGATGCTGTTCACATCCCCAGAGGTCTCAGCCCAAACCCTCCTCTCCTAACAGGGTAGCACTCACCCCAGACATGAGAGAAGACCTTTCTAGTAGCACAGAACTCACAGCCCAAGGTCCCTTCCAAGATGCCACTGTGCTCGGCAAGTCGGGGCTTGCGAGGCCTCCACTCCGCCTGTGTTGACTTCCCCAGTGCCCCAAAGAAACCAGGAGACCGGTCTCCCCCGCCCTGACTGATGCGTCCACCCACGGCTGCAGACAGCAAGGCTCCGCTTTTAACCCTGCCCGTGCATGTTTCCAGATCAGCTGGCAGCCTCTCCCTCCACCCCTCCCAGGTCACTGGCCAGCATCTTTGGCTCTCCTCGGCACATCCCCTCCTACTAGCCTCCCTCTTCCCGACCTCTCTTACACAGGCTGGACCGCAGGGGCTGACTCCTGCTGCCCTTGGCTGAGGCTCTTCACTGTTTTAAAGCCCCTGGACTCCCCCTCCTCTGGACTCAGTGCCATCTTCCTCCCTCTTGGCCAGTGAGTCTGTGCTCTTGTGGGTAAGACATTCCCAATGCACAGACCTCTGTGCATTCCACTGGCTCCTCACCTCCCCGTTCTCTAGGAAAACCTTCAACCGCTCACAGGGGGTAGCCCGCCTGCACCCCGTTTATCCTCCTTCTCTTCTGTTTTCCCTCAACATCCTCCAATCTTCAGTTATCCACCATCTAGTCTCTACATCCTCAGGGCTTCCCTGGCAGCTCAGATGGTAAAGAATCCACCTGCAATGCAGGAGACCTGGGTTCAATCCCTGGGTCGAGACGATCCCCTGGAGAAGGGCATGTCTACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAAGAGCCTGGTGGGCTACAGTCTATGGGGTCACAAAGAGTCGGACATGACTGAGCAACTTTCACTTCAGTTCACATTCTCAGCCTGATGTCTTGACCTCCCTCCTTTCTGTACACTTCACTCTGCATCCTGATGGTGTACACACCACACCTGGACCCCAGCACACACCATCCCAACCACTGAACACCACCAGGACCCACCTGCTCACCCCTGCCTGCTTCCCCACTTACCTGTGCCCTGCGGGCCTGCCTGCCTCCCTGTCCTCTCCCCTCTGAGCTCTGGCCCATGGAAGGTGCCTGACACAGCAGTGGTCAGTGCTTTTCTCTAGAGTCTCACCTGCCTGGGAAGTGGTCCTCTTCCTACCTCCATGAAAGATGGAGTGGCTGGGGCATGGAGGAGTTTAGTAACTTGTGAAGGCCACCTGCCTGGAGGTGGTGGTAACTGGATTCGAACCTCTGGGCTCCTGGATTCCCCAAGGCTTGTTTCATGGAAGAGTTGCCCTGTCACCGCTGCCCCAGGCCTGGGGAGTGAATGCACGTTTGCTCTCTGCTTTCCTTGTTCTGGGTGCGAGGTGGGGGTGAGGAGCCCCAGTGCCAGCCGCTCATCTCTGGGCTGGTGACAACATCTCAGCTGCAGGGGGAGGTGGATTCTAGCGTCCCCTCCCTACCCTCCTCAGGCCTTGCTTGCTGCAGATGAGGGGGTGAGGGGGTTATCCAGGAATGGGAAAGTTGCCCAGCACTGTTCAGCCTTTAGGCTTCTTTCTCACAGCTTGGACCCATTACCAGTCCCAGGCTTCTCAGGAACCTTCCAGGCCACCAGCTCTGCCCACCTGTGTTTTGGGCTCTTGGCTCCGCCCGCCTCCTGCAGAGTCTCCACTGTCCATGTGGGGTCTTTTTGTCTCTGCTCTCCACCCTCCCTCCACCCTGTCTGTGGACAGCTGGCTTCTCCCAGCCTTTGTCCAGAGATTGGGCCAAACCCCCATCCTCATCTGCTTTTATTCCTCTTCACAAACATTTCCCGTCTTGGCTGGTGGCATTTTCCATGTTGTGGGATTTCTCGTGTGTAGCTGGTGGGGCGCTGGCTTCCTGAGAGTCTGCGGCCCGGAGATCCCTGGGGTGTGGGCAGAGGGGCGGGGTGGGAATCTGGGGCTTCGGGTCTGGGAGCTTTTCGGCTCCCGCCCCAGTCCTTCCCACCTCCCCCACCAGCTTCTCAGTGCTCTTTTCCACAAAAGCCAGGATGCTCTCTCCTCCATCAGTCCACTTCCCTGGTCTCTGCACCAGGGACCCACCAGCATCCCCTGGCCTGGGGGAGCATCCAGGAATTGTGACGTGTGTGCACAGCTGCTCAGGACTCCTTGCCAGCAGAGCTCACATTCCTGGTAGTTTGTGGCGTCCACATCCTGATTCTTCTTGTGTTTCCTCAAGGAGATGGCTGGAAAGGGTTGGGACTCTGTTCAAAATCCAGTGTAACGGGGAGACTTTGAGCACTCTGGGGTGCTCTCGGACGCCCAGTCTTCCTGCTTTCAGGTGGAGATCACCCACCTACCTTTCAAACTGGAAGGTGTTTTGGGAGCACCAGGGGGGAACCCACAGAGCAAAAGAGGTGCCTCTTGGCTGGACTGGATTGGCCTTAGCTTCATGCGGGCTTCCCCGGTGGCTCAACGGGTAAAGAGTCTGCCTGCAAAGCAGAAGGTGTGGGTTCGATTCCTGGGTTAGGAAGATTCCCCTGGAGAAGGAAATGGCAACCCACCTGAGTATTCCTGCCTGGGAGATCCCATGGACAGAGGAGCCTGAAGGGCTACAGTCCACGGGGTCACAGAGTCAGACTCAGCTGAGTGACTGAGCATCCACATGGTTCATGCTCCCCCTTTTGTTTGTGTTGTAGCTGCTTTTCAGAGAAGGGCGTTTCTCCAACGGAAGGAAGGAAGGAAGCTATTATCCACACTTTCCATATCAGAGCTTATGTCCCAGTTCACTCCTGATAGATCCTCTTCCCAACCCACCCCAGACCCTGACAGCCCATGTTCTCTTCCTGAGCAGGGAACCTAGACCCTCTCTTTCCCTTCTCCCATCCACCCTCACTGCCTTGCTCACTGGCCTCTCTCCTCCCCCAGGGACTTGAATAAAGTCTCAATCTTGCCCAGACTGCAAACTGCGCTCCATTTCCCATAAACAGGTTTATAGCTGTGCCTGCCCAGACAGACTTCCCGCTGGCGGCAACCCAGACTCCTGCTTGCAACACAAGCCTCATGTCATGTCATAGAAATGCTGTACCCTCTTACTGCCATGGGACGCTCCCTGGGCTGGGCTGGGCTGGGCTGAGCTGGGCTGGGTCCCCTTTCTCCTGTAAGCTGCTCTCCGATGGCTCCAGGTCCATTGAAAGGAGCGGGAACCCCCTAATGAGCTTCCTTCCTGCTCACGTTGGGTGGAGGGCCTGGTAGAGGGTCCGCCTTACAAAGACATGGCTGGGTTGCCCAGCCTCAGAGTCCAGAGTTTACAATGAGGTGGCGCTTGACTTGTTGCTGGATCCTTGGTGACTGGCACAGTGCCTGGCATATTCAAGGGCCCAGTGAGTGTTGGTTGAATGAAGGGCAGAGTGATGATTTGTGGGCCCTCCTCCCTGACTCTCTGGGTCTTTTCCACTTCCTCCCCCTGACTTCTCCTCCAACCCCGGCTCCTTCCCTACAG
Seq C2 exon
ACAGAGCTGTCACTGCAAAAGGAGCAGTTGCAGCTCAAGATCATTGAGATAGAAGATGAAGCTGAGAAGTGGCAGAAGGAGAAGGACCGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009419:ENSBTAT00000012396:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=19.5),PF082026=MIS13=PU(29.0=21.4)
A:
NA
C2:
PF082026=MIS13=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development