RnoINT0155793 @ rn6
Intron Retention
Gene
ENSRNOG00000021771 | Trim29
Description
tripartite motif-containing 29 [Source:RGD Symbol;Acc:1307858]
Coordinates
chr8:47674321-47683137:+
Coord C1 exon
chr8:47674321-47675242
Coord A exon
chr8:47675243-47683041
Coord C2 exon
chr8:47683042-47683137
Length
7799 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
AACTTCAACTTTCTCTACAGACT
3' ss Score
7.55
Exon sequences
Seq C1 exon
CTCCCACAGGTGTGTCCCTGGGCTCTTGCTGCTAGCCCCACTCCGTGCCTGAGACACCCACTGAAGTCACCAGCCACAAGACCCCAACCAGCAGAAACAGGCTAGCAAGTGACCTGCCATGGAAGGTGCCGATGCCTCCAGGAGCAATGGGGCCAGCCCGGAAGCCAGGGACGCTCGCAGCCCACCGGGTCCCAACGGCAGCCTAGAGAATGGCACTAAAGCAGACAGTAAGGACACCAAGACAACCAACGGGCACAGTGGGGAGGTGACAGAGGGCAAGACCCTGGGCAGTGCCCTGAAGTCAGGGGAGGGGAAGAGTGGCCTATTTTCCAGCAACGAGTGGCGCAGGCCTATTATTCAATTCGTGGAGTCAGTAGACGACAAAGGCTCCAGTTACTTCAGCATGGACTCTGCGGAAGGCAGGAGGTCCCCTTATGCGGGGCTCCAGTTGGGGGCTTCCAAGAAACCTCCTGTGACCTTTGCTGAGAAGGGGGAGCTGCGAAAGTCCATCTTCTCCGAGCCCCGCAAACCCACGGTGACTATCGTGGAGCCGGGGGAGGCCCGCAGGAACAGCTACCCCAGAGCTGACTCCAGCCTCCTGCTGCGGTCTAAGTCGGGCTCTGAGGAGGTGCTGTGCGACTCCTGCATCGGCAACAAGCAGAAGGCTGTCAAGTCCTGCCTGGTGTGCCAGGCTTCCTTCTGTGACCTGCATCTGAAGCCCCACCTGGAGGGCGCTGCCTTCCGTGACCATCAGTTACTCGAGCCCATCCGGGATTTCGAGGCCCGAAAATGTCCCCTGCACGGCAAGACCATGGAGCTCTTCTGCCAGACCGACCAGACCTGCATCTGCTATCTCTGTATGTTCCAGGAGCACAAGAACCATAGCACTGTGACGGTGGAGGAGGCCAAGGCCGAGAAAGAG
Seq A exon
GTGACTTCCTAGTCCCCTCGCTGCCTTCCCTTACCCTTCCCACCTTGACCCTCACTGGGGACTTAAGTCTTCACGGTGCTCTGCTTTTAGAAGACAGTTCTTCCTCCTCTTCACCTCCGCCAGGGGCTCAGAGGTCATTCTCTAACTTCCAACGATCTTATGAGAGGTCATCCCCTAGCAAACAGATTAGACGCTAGGCTAAGCTCACGTGGTGAATCTTAGGTCAGGCCAGAATGTAAAACTGAAGGATTCGGAACTCTTCTGGACTCTGCTTGGCTGATCTGTCTCTGTCCGTCTCTCCATCTGTTTCTGACTCTCTGTTTCTGACTCTGTCTCTGTTTCTGTCTGTCTCTGTGTCTCTGTCTGTCTCTGTGTCTCTGTCTGTCTGTCTCTGTGTCTCTCTCTGTCTATCTCTGTCTCTCTCTTTCTTTCTCTGTCCTCACATGTAATAACTAAGGCAGGGAGGAGACACTAAGAGGGGACTTGAGGGCTTCTGAGGACCCTTTTTGCTAGTTTCAGGTTTGGATTTGCAGTCCAGCAGCTGCTTGCTCTGCCCTAATCTGGAAGCCACTCCCGTCATCCCCACCACCCCCATCTCCATTGCTTACTCTGCTCTCAGTCGGGCCCTGCGCCCTTTGTTTTTGTGGCTCCAGCCAACAGGTCTGTGCCTGAGGGTGGACAGCATTGGAGTGAGAGCATTTGTGGGTGGGTGGATGTAAATGTGTGTTTTATACGCACGCGGGTGTCTGCGAATGTGGGTGTCTGCTCGTATTTATGTCAGTGTGTTTGTGTGAATTCCCTGTGAGTGATTAGGCGGCAGGCACATCCCCGGGGAGGAGCAGAGGCAAGTGGAGACTTGTGGATATGGTACACCTGGGGAAGGTGTTCTGGGTTAAGGCCCAGCTGTGGCCGCTGGCCTTGTCCCTTCCTGAGCTCACTCACCCAGCAGCATGTGGCTGGCCTCTCCAGGGGCAAACCTTCCTGGTGGCCAGTGCAGGGGTTTTACTTTCTTGTCAGCTTTTGTACCCCCAAGGGACCCCTCCTTACCCAGCTTCATCACCACAGGCTTGCTGGTCACTCACTCTGTGCCTCTTGTCCCTACCCTTGGGCAGCAGGTTCTGAGTCACAGGTAGGAGCAGACTCAGACATCCTCTCTAAAAGCTTCATTTGGCTCCCAAAGGTACCTTCAGCTTCTCCTGTCCCTGACCCCAGTGTCCTCTGTCACCAGGGTTCTTTGGTTCCAGGCCAGCTTTTAAAAAAGCTTTAGGATGGGAGACAGAGAGAGGGAACGTGAAGCCCATTCTTAGGGACTGTGCTTGGGAATTCAGAACAGAAGGAAGGGGACTAGGAGCCAGCCTTAGACCTGTATTAGCAGGTTGCCAGTCACGAGCTCTAAGACAGCGACTAAGTTCCCCCCATGTGACACCGAAGGATGGGCTAGACCAGGGGTTCTCAACCTGTGGGTCAGATCCCGTTGGCAATTCTCTGTCTTCAAAACTATTTACATTATGGTTCATAGCCGTAGCAAAATTACAGTTATGAAGCATCAATGAAAATAATTTTGTGGTTGGGGTGACCCCCCAACAATGTGAGGAACTGTATTAAAGGGTCACAACATTAGGAAGGTTGAGGACCAGTGGTCTGGACTGTTTTCACATTTCTCTGTGAAGCCCCAGGAGTTTTAGAAAAGTCTCTGAGGACTCTGGGGTGAGAAGGGGGACAAAGTGGGCACAGAAAGCAAAGGTTTCGGGTCCTACTTCCACTGAAAGCCTGGCGTACACTGGTCTCTTTTCTGGGCAAACTATGGCTCCACTGTGAGTGTCTGTGGAAGGGCCGCTTCCAGAGGGCAGGAAGGTGTGGGCAGCCCAGTCTGGAGCCGCAAGAGCTCCAAGTTTGCTATTCTCAGCCTGGGGCTGCTATAGGTCTCAGAGAGTCCTTGACTTTGAGGGCTTGGTAAAGAAGTAGTGTCTCAGACAGACAAACAAGATAGGACACCCTCCCAGGTATGCAGAAGCATAAACACGGAATTGCAGAGGGAGAATACCAGGGTTAATGGGGCATTCACAGTCTCACGGCCTCCTGTTCAACCCGAAGATGGGGGGGGGTAGGGTCATACCCCATGAAAGGATGGAACCTGTGGAACCTGGCTATATTATATATTCAGGCTGGAGAAAGATGTGCCTAGGTCCTCTTGCAATATTTAAGATCACCTTAAGAGGGAATGGCTTCCTGGAATGGCTGCTATGGTGGGAACTTGGGGTAACCTGGGGTAACAACTTACCTCTCTGCTCTTGCAACACACAAGGATAGACAGAGAGGATTGGGGTTGAGCATCCAGGAGGCAGCACTGAAGCAGTCTGTCTGGGGCTGGCTATTATGGGATGTTAGACTTGGGGGGACTTTGACCCAGACTAGGGGAGGTGGTCTGATGGACTGGGGGTGAAGCAGAGTGTCAATTCTGGCATCCTCTGAAGGCATCTGAACCAAACTCAAACACCAGTTCCCGCATGCCTTTGTGCAAGGAAGCAGGCAGAACCAGCTCTGCAGGCCTGCTGGTGAGGCCAGGTGAGGTCATTAGGCAATGTCTAGGTTAGTTGCACAAAGCCGAAGATGACACCCATGGCCACGGGCACTCGTGCCCTGGACCTCCATCCTCTGTACAGACTTGGAGCACAGGCTGTGCCGGGAAAAGATCATGTGTTGGGCCACATGACGGTGGCCCATTCTTCTAGTGGAGCTCAGTGTTTCCCTTTCTACTCTCCATGTCCCCAGTGGCCCCCTAGACGCTCACCGGTCTAGCTTATACCTCTGGGTGTTCTCTGGCTGTGTTAGGAGGTAAGATGAAGAGGAGCATCAACATCCCGTGTATCCATTGTCTTCCCTAACCATTCCAAGTCCCTCCAGCTCCAGCCGCCTGCTCTAGGCGGCCCTGTCTTAAGGTGCATTTGACCTAGTCTCTTCAGTGCTGCCTAGTCCCCTTGGCGTGGGAAGGCATATGCTAATGACGTTCAAGCTGGAGTGCTACCCTAAAGGGGCTCATACTAAGGGACTTGTCCTCACTCTAGGCATCCTCATTTGGTCCAGTTCTCTTACTTGGCCCCGTGGCTTGGTTTCTCATCTTCTTGCCCAATTCTCTGAGCAAGGCTGAGCCACTAGGGCACTGGGCTAACACAGCCACTGGTCCTCGGGTTTCTCACTGTGCTAGTTTGGGGGGACCGGGATTCAGGAAGAGGAGCCAGACTAAAAGCTGGGGTGCCTAGAATCTTGCTGGGCATTTTCAGGGTCTAGGTGTGAGACAGGGGCATGATCAGTTGGACGCTGAGGGGAATCAATTAATGATGGGAAAGTGAGGACCAGGCAGGTGGTTGGTAATCCCGTCTCTATGGAGCTCCAGGGTTGGGCTCAGCATTTGCATGGTTACAAACAAGCATTCCTGTGTCAAGGGGGCGCAGGCTCAGTGATGCAGAGACTCACACAAAGGCCAGGGATGGAGAGCTGGAGTGGGGTGGGATTCGAGAAGGAGGGTGTTCTCTCTACCATTTCAAACCTCTTTCCCCAGCAGGATTAGAAGAGTCTTCTTGTGATCTTAAAATCCAAGGGTCTCCAAACAATAGACTGCAGGCTGGGGTCCCTAGATGATCTGTTAGAACATAGAGTCCCTCCCTGTCTTTGCTCCGGGATGTACTGGTTCACATGGAGTCTCATGTATAACTCACCACAAGGGAAATGAAGCTAAGGGATGGGTAGTGACAGCTGTACGGTTCCTCAATGATCTGCAGATGCCAGGATGAAGCCTTGAACTCTAGCTTGCACCCTTCTTTGACCTAAGGCAGGAGGAAGCAAAGGGGTGAGAGGGGACCCTCAGTGGAGCTGATGGACAGATATAGGGCCATTTGACGTGTGAGCATAGAAATATGAAATCTATTCAGCATTTCAGATTCTTATCCAGGTAATTACTATGTGTCTGAGAGTACAAATTTGGCAATTAACTGGCTCATTTGGTAAATGTCACAGCCCAGGGCCTGTGCAGTTAATTCAGGCAGACAGAACATCTTGGCTGGCCAGGTTCTTCTTTCTGGGGGCCCTGGTGGTTTGCCTGTCTAGTGCTTGACTATGTCTATACTTGACTTGAAGCACCTCAGGATGTGCCATCCCTGTACTCTCCGCGGGCTTCTACTCACTCAAGGACATAAGAATTTTAATGCTGGGTGACCCACACAAGGGCCATCCTAGCCATCCAGAGGAGAGGCCCCAGACAGTGTGGGAGAAGGGAACAAAGGAAGCTTTTAGGGACAGGCCTGGGCAGGGTGTGGGGAAAGAATCGAGGAGTAGGAGGAAACCAGGAGGGAGGAATGGGGAGGGGCGGAGCCCTAGGGAGCTGACACTTGTCAGTCATCTGGGGGAGGGGAGAAAGAGTGGTAGCTGGAGCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTAGAAAGGGAGAATTGCTGACCGGCACCAGCTCCAAGGAGGAGGGAATACGGTATAGGACAAGGTCTATGTCCTAGCAATGTCTAGACTTCTACCTAAGAGGTGCTTCTGAAGGCCACAGAATAAGAAGTGGGCCCTGTGATTGCAACTTGGCTTTACATCTCTTTCTCAATGTGTACACTCGGACCAGCTGCATAGCCCCTCTAGGTCTTGGTTGCTGCTTCTGCAATGCATGGCTAACACCACTGACCTCCACAGGGTCTTCGGCTCATAAGAGATGCTCAATAGCCCAATGCCTTTCCTCTTTCTATAGTCATATCATCTTTGGTCATCCTGTTGTTATTTTCTATGCAGAAAGAAAACCTGACAAGCACTAAGAAGATGTAAGGCACATCCCTAGAGATCGGACCCTAATACCTGTCCTCAATGGGGCAGGATTCCTCCTAGATGGGAAAAGGGACCATTACTGGGACACTACTCCCAGCCCCAGGAATACAGTGTATCCTGCAGGTCTGGTCTTGCTGACTGTGGTGTGTGGGTACTGTGTCTGACATCTCCCAGCCCGTGTCTGACATCTTTAGAGCCTTAGAGAGGAGGAGGGCCAGTCTCTCCTCTGCCTTGACCCATTCTGCTGCCTACTGATGCAGACAGCTTGTTTCTACTTCTGATCCTGCCCTTGCACGTGCCCAGGCTGGCCATCTCCTCCTGCCAACACAGGTGGCTAGGTAACACCTCCTCTCTCCTCTCCAGACCTCAGATGGCCCCTGTGCTCCTCTCCTTCCCTGTCTTTCATAAAGTGACTCCCAGGAGATGATCTCTCTTTGTCCTTAGCTTAAATGCTTTGCGGCCTCAAACTGCATTGAACTCTGTCCCTTGGACTCAGTACCTCGTTCCTTCCTCTTGGCTAGCTGATCCATTCTTCCAGGAAGAGCGGTTACCCAGTTGCGGACTGACAGACCGCTGTGCTAGGTGTCTCTTGGCACCACTGCTTACCTCCAGCTCTCAACTCTGGTGCCCATCTTATCCCACTAGCAGGGCTTTGCCTGGCCTCAGCCTTTTCTACCTCTTTCCTGCTTCCCTCAGGGTCCTCGACCTGCAAGTGGATATCTTACCTTTTAAGTGTGGTGCCCCAGCCACTGACAAACTCCCTGTCTGCCCTCAGTATCTTGACTGTGTCCAAACCACATCTGGACTCACCAGGCCCCACGTACCAGCCTCACCATCCAACACATCTCGGCCATTGCCCTACTTGCTATGTCCCACCTGGGAGATGCCCCAGAGAAGTGGCCATGGGGACCACGGGGACCATGGGGACGTGACTCAGTCGGTGCTTCCTCTGTGCCAGGCGCTTTCCGAGGGCCTCCCTTGGTGATCCCCATGTCTCCTTCACCCTCTGTAGTGGTATGGGTGCTCAGGTTTCCTCTACAGCACAGAGGGAATGAGAGCAGAGGTAAGCGAAGGGACTTAGTAAGATCCCACAGCCTGCCCAAGGGAGGCAGCTAAGCGTCTCAACCTTAGATTCTTACTCATGAGCTTCAGGTGAGCAAACTGAAAAGGCTCAGCTACGGAAGATGGGAGCTACTCCTGCTGTGCTTGGACCCTGGGATGGGAGAGTTGCTGGGACACACCCCTTACCCCATTTCAGCGTCCAACTGATCGTGTCTCTGTGGTCAGGCCTGGACCACATTAGGGTCTTCAGATCACTAGCTCTGCTGAGTATTATTTCCTGGGCACTTTGACTCTTCCCCCCGGAAGAGTGGAACTGGAGGGTGGGGGTTCACTCTCTTTGTTCTCTTCCCTCCCGCTACTGTGTCTTCTCCCAAACTTTGTTCCAGAGACCCAGCCAAGTCTCCACCCTCATCTCTTCATGCCTGTCTTCCTCTCCGGTGATGGTATTTTCCATGCTGTGGGGGTTTCAGACGTTGGCCGTGGGACAGGTGCTTGCTGAGAACATCTTAGACTCTTTGCCTGGAGAGCCCGGGAATGTGGTGGTGGTTGACAGGGCATGGGAGAAGCACTTCCTGTTTGGGGGTCTCTGTGGTTCCTGAGTTCCCGCTTTCCATACCTTTGGACACCATTTCTAAAAGGCCAATGGGAACCTATTTAGTATTAGAAGCCAGGCTCGGGGATTGTAGCGAGCATCCCAGGGCATTTCCTCAGCCTCGGCCTCAGGGCCTCAGGGCCTCAGGCACCCTATAGGCACTCCTTAGTTCCGTGGTCTGTTCAAAAGCAGCTGTGGATGCCGAAGGCCCAGCTGCTCACACCTCCTGGCTGGGAGAGCTCATCTCCTGGTTTGTGATTTCTTCACCTTAGCCAAGGTGTTCCTGTAGGTTCCCTCAGGGAGATGGTTAGAGAGACGGGTAAAAGTCTGTTTTTGAACCCCAGTGGTTCTGAGAAGCTCCAAGTCATGCCAGATCTCCTTGAAGGATGATCCTTTTCTCTTCTAGCTGGACAGGGCTTTGGGAGCCCAAGTGAAGTCCAGGAGGAAAACAGAGGTGTCCTCGACTCACCCAATAGCCTTGGCTTTAGTTCCCTGCCTCCAATCTGCCTCAGTTACTACTTTTCAGAGTACCTTCCCCCGACATGGAAGCCAAGGGTGAACTTAATCCTGATGTCTCAGTGCCCTCCCGATAGAGCTTCTTTCAAGCCCACCACAGGGTCTGACGGTGTGTGAGCCTCTGAGCGGGGATCTCAGGTCCTCTCCTACCCTGCCTGGTCTCACCCTGTAGTTTTTTTCCTTCAGGGAGCCTGGAGGAGTGTTCCGGTCTTGCCTACACTGCAGATATGCTCCCTTTCTTATAAACAGGTTTACAGCCGTGCCTGCCTAGACGGAGTCTGTGCCGGCGGCAACCCCAGCTCTTGCTTGCAACATAAGGCCTGCGTCATGCCACAGAAACGCTGCATGGGTTTCTGCTACAAGACACTCCCTGGGCAGGGCTCTAACAAACTGGGCTGAGTCCAGATCCTCTTTTTCACCAATGTCCCAGGCCTACTGAATGGAGCCAGAGGCTCCCAGCTTTGGGGTTAGGTGGGACTCATCTAGGAGGCTTAGCCTCTGTGAGGACACAGCCTAGCTGCTCAGCCCTAGTGGTCCATTAACACAGAAGTATGGTATTGGATACATTGCTGGATTCTTGTCCGATAGCACAGAGCCCAGCAGATCTGAGGAACTGATAACATTAGCTGAGTGAAGGACTTTACAGATGAATGTGCCTGAGTTTGCGCTATGGTGAATCACCAGCCTGGGTCTCTGGTTTTGTCTCCCCCTACCCCTCCCTGCTCCTGACAACTTCAACTTTCTCTACAG
Seq C2 exon
ACTGAGCTGTCACTGCAAAAGGAGCAGCTGCAGCTGAAGATCATTGAGATTGAAGACGAAGCTGAGAAGTGGCAAAAGGAGAAAGACCGGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021771:ENSRNOT00000026170:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]