DreINT0038674 @ danRer10
Intron Retention
Gene
ENSDARG00000094877 | btr07
Description
bloodthirsty-related gene family, member 7 [Source:ZFIN;Acc:ZDB-GENE-110921-1]
Coordinates
chr7:15928837-15929619:-
Coord C1 exon
chr7:15929061-15929619
Coord A exon
chr7:15928933-15929060
Coord C2 exon
chr7:15928837-15928932
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCTGTCTGTATATACTGTAGATT
3' ss Score
8.3
Exon sequences
Seq C1 exon
TTCAGCTATGTCATCCTCCAGTAGTGTTCTGTTTGAGGAGCTTCACTGTTCAGTGTGTCGGAATGTGTTCACTGATCCCGTCAGCACTCCATGTGGACACAACTTCTGTAAGAGCTGCCTGAACACGAGCTGGGAGAACAGTCAGAACTGCATCTGTCCATTGTGTACTGAAACATTCAGTAAAAGACACAAGCTCAAAACCAACACGACACTTAGAGACATCGTGAAGCTTTTTGATGAAAGGTATAGCCTCAGAATATCTGGGGTTCTCTGTGACATCTGTGATGGGAGAAAGATGAAAGCCATGAAGTCCTGTCTGACATGTCAGACCTCTTTCTGTGAAACTCACCTGGAGCCTCATAGGAGAGTCCCGAACTTCAAGAAACACAAACTAATGGAGCCTGTGAAGAATATGAAAGAATATATTTGTCAGAAACATGACACACCTCTGGAGCTGTTCTGTAGAGATGATCAGATGTGTGTTTGTGTGTTTTGCACTGACGGAGACCACAAGACTCACCACACTGTTCCTCTAGAGGAGGAGAGTAAAGAGAAGAAG
Seq A exon
GTATGAGTTTCTCACAACAGGAAAACTCCAATAACTTGGTTGTAAATATTTGATCAAGATCTTCTGTTAGAAGATTTAAAATCCTCAACAAGTAATTAATTGTGTGCTTCTGTCTGTATATACTGTAG
Seq C2 exon
ATTCAGATGATAAAGACTCAAAAAGATCTACAGAGTATGATCGAGGACAGAATTGGGAAGATTCAAGACATCAAACACTCAGCAGAACACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094877:ENSDART00000142619:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=21.4),PF0064319=zf-B_box=WD(100=21.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGTCCCGAACTTCAAGA
R:
TCCCAATTCTGTCCTCGATCA
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]