GgaINT0138244 @ galGal3
Intron Retention
Gene
ENSGALG00000006722 | TRIM29
Description
NA
Coordinates
chr24:3904247-3911373:+
Coord C1 exon
chr24:3904247-3904667
Coord A exon
chr24:3904668-3911277
Coord C2 exon
chr24:3911278-3911373
Length
6610 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
GGTCTCCCCTCTTCCTGCAGGCT
3' ss Score
10.8
Exon sequences
Seq C1 exon
CGGGCAGATAGGAGACATGAAGAAACCATCCCTGCCTCTGGTGGAGACGGGAGACCTGAGAAGACCCACCTTCAACAAGGTGCCTGACAGAGCAGCTGGCTCACGGCCCAGGGTGAAGCTGGAGGATGTGCTGTGCGATTCCTGCATCGATAACAAGCAAAAGGCCGTCAAGTCCTGTTTGGTGTGCCAGGCTTCCTTCTGCGAGCTGCACCTCAAGCCTCACCTGGAGGGAGCAGCTTTCCGGGACCATCAGCTCCTCGACCCCATCAGGGACTTCGAAGCAAGAAAATGCCCCGTGCATGGGAAGACCATGGAGCTGTTCTGTCAGACAGACCAGATGTGCATCTGCTACCTCTGCATGTTCCAGGAGCATAAGAACCACAGCACGGTGACGGTGGAGATCGAGAAAGCAGGGAAAGAG
Seq A exon
GTAATATAAGGCTTCTCTCATTGCTTTTTTTCCCAATCATCTTTCCGATCGAACTCAATGTCGCTCCAGAGCTTTTTCTCTCTCTCCTACTGTCTCTCCTAAAATCATGGCTGCAATGTAATCCTGGGATGCAAGGGAGGTGGTTGGGAAGGGTTTAGTGGAGGACTGACGTTGCCAAGGCTCTGCTGCACTGGGACTGTCTACAGACAGCCTGGTATAGAAGCACATCCATGGTGTTGTGCAGCAGACTGTTTTGTTGGGTGCAGAACCCAACCTGATCACAGCACTGGCTTTCAGCAGGAGCTGAACTAAAGCCCCACATCCTCAGTTTTCAAGCTGTGACCGTGTTTGTACAGTGCTGCAAAGTGGGGCCATGCCTGAGATAAGGACCTCCTGAACGTGGGCACACAGATCAGTGCTGCTCAAGGTTGTGGTTACAACAGAAAACTGTGATGTCAGCTCCCTGGAGTGAGCTTCTGCCTTCTTGTTTGTCTTTTCTGTTACGGAGATAATGATGTTGAACCCCACCTGTGGGAAAAGTCTTTTGAAGCTTAGATGAAGAAAAAAAAAAGCTTGGTGCAAACACAGAACGTTTAATTTTTCCCTGAAGTGTTACTACAACAGTCTTAGAAGAGGGACATCTAAAGAGATGGGACTGGCGTGTGAACCAGTGCTCTTCTCTAATGAAAGTCTTCCGCCTTTGATTGCCTGAATTCTCATTCTGTTTGCTTTCTGGGTGGATGCACAATTATCCCACTTGCTCCAGCGAAGGTCAGGGTCCCACCACAGTCAGTTCTGTAAAGACATACCCCAGCCTGGAGACCTTCTGGTCTATCCAGACAGGGCAGGAGAGATGACAGAAAGGAGACCCATAAAGCGGTCACATTAAACCATTTGCCTAGAGTCACAGCCAGCCCATGGCAGGAGCTGGAAGGGCACCCAGACCTGCTGGATCCCAGCCTTAATCACAGCCCAAGAGCTCTGATGTGGCGAACAGGCACGTACAAGTACCCGCTGTTGGAAATTCTTGAGTTACACGTAATTCAGAAGAACAATTTACAGTGCTAAGAAGGTTTAACTCATAATGCTGGAGGAACATCTTTTTTAGAGCTTCTCTGTCTTTCCTTGCACAGTTGTTGGTATTCTCTTGCTATGCCATCTTCACCTTGCAGCCTGGCTGGAACCAGACAAAGCTTCTTCCACGTCTCAGACGGTCTCTCAAAGAAATTCCTGCAGGGATTGCTATCTGCTGTTTGTTTCATGATTGCTTGGTCTTGTGTTTTGATGTTGGCTCTGAAAGATTACACAGTGTAAGCCTAACCTTCATCAAGCTGCGCCAGGTTGTCCGATTCCTCTCAGCCATTTCCATTGAGAAAGCTCCCCTGAAGAACGAAAACTGGCCAAAGCTTCTCCCCATGTTTGGATGAGCCTACAACACCTTGCTTGTACATAGGCAGGCAGATCTGGGTGGAGGAACCTTCACCTAGGATTTAAATGGTGTTTGATTTCTCTCCCAGAGCGTTGATGCTGTTCTGGTAAGGTCTGTGCTTGCCTTGTGCTGATTCTGCTGCTGCTAAGCCCAGAGGATTTAGGGCTTTATCAATGAATCATACACATGTGCAAGTTTCTCCTGACAAGGAATCTTGGTCGTGTTGTAACTTGAGGGAGCATTCACTCAGACAAAAACAATTAACAGGGTAGCTGTTGCTTACAAATGTTTATTCCTAGCCCTGATCTATTCTGCATTGGTGGAGCCTTAGCAAGAACCACAGGGAGGGACGAGCGCTGCCGGGTCCCTTGTGTGCATCACCTCTTCTTTTCAAGTCTTGCAAATCGACTGAGCTGGAACATGACCACAAATTGGTGGAGTGGCAAAGTGTGCCTGGTGCTGCTGCTGGCCTATGTGGAAAGAGTGAGCAAAAACCCCACACCGGGGCAACCCCAACCCCAGCACTGCTGCCATGGCATCACTTTGCGCTCAGCAGCTGCAGGGTAGCTGTCATGCAGTGAGGTGTATTACGCTCCAGTTCCTTCCATACTGCAGAATGATGCAGTCTACAGCCCCTTCCATGAGTTTCCCCCCTCTATGGGCCTGTAGGGAGGAAAGCTGCTGTATTGTGCTGGTGGGAAACTGAGGGACAGCTGAAGAGCCTTCCATAGAATGAGGTAACTGCTGCACTGTGCAGACAGAGAAAGTGCAGCTTAAGAGGAATGCAAGCAAGCCAGTATGCAGACGTCTACTGGTTAGGGCATTTGGGGAAGCAGTGGAAAGCTTGGGGTTGCTGTGAGGCAAAGGGAGAGCACACCAGCATCTGCCATGTCACAGAGCCAAGCTGGGAGCCCCCCATCCCCTTCCTGCTGTGCTGGCACAGGGGTCAGACAGAGACAACTTGCCATGGAAGACGGAGGTATTTTTTCTAAGTTTCCACCCATTGGTATTTGCCTATTGTACCCAGAAAACCCTTAATGCCTCCCCCAGCTCCACTTTGCATGAATTTCCTGCTACAGACTTAAAGCAAAAGTAACACCTCCACCAGAACCATCACAAGAAACAGCCACTAAAAAGACTGTGAGGCCGTGTAATAACCACACCACTGAAAAGAGAGAGCTGCCAATTGCAGCCTGGACGCTCACATAAACCCCTCTGGTCAGCTTGATTCATCAGCAGCACCAGACCCCCTCCCTTTCAGACAGCCCTTCATTTTGAAAGGGGATCCTTCATCCCAAACCTGTTTTACAGGCCCATTCTCAGAATGAGACGACTTCACAGATGCCTGCCAGCCACCGAGCTGCAAATAACTCAGCGTTACGATCCATCACAGCCTCGGCGCTCAGCACGTCGGGTCAGATCTGGCAAAAAAAAAAATGCTTTGGGTTTTCTTTTGTCCTTTCATTCTTTAGCTTTAGAGAAAAGTTTCCACCGCACGGCAGGTTTAAAGGGTCGGCAGAGAAAAGCTGTGCAGGAACGGGAGCTGGGTGTTCTGCTTGCTTCTAAAAGCGGAGCCTTCACAGAGGATGGAGAGGCTTTGAAGTCAGCCATCCTGAGAGGGGATCCAGAGGGGCTTCCATCCGGGCCTCTCTGTAGTGCTCTGGTTGAACATACAGCATAAAAAGAGCGTATCGATGTGCCAGAGGAGAGTTTTTGGCTTTTCCCACTGATGCAAGGGCATGGTGGAGCCTGGGGCCTTATCTGCACTTGTTGTGGCTGCTCTGCAGACACATGCATGCTCCTTCCACAGGAACAGCACAGCTACCCGTACACCATTCCTTCTGGCTGGAAGGCAGACAAGCAGACCTGTTGAAAGCTGTGATTTAGAGCAGCTTTGCCCATTTGTCTGCATTCTGCAGTGCTGCCTCTACAGGGAGGGCAGAACCCTCATGGGTAAGGAACCCTCCATCTCCTTCCAACAGGACCTTTAATGGTCTCAGCTCGGGCACTGACCAGTGGCATTAGTTGCAGGATGTTGGCAGCCTGCAGTAACTGCAGCCCATTGCCACCTGCTTCTGCTGAGCAAAAGCTTAGACTGAAAAACCAATGGCAAAACCAGCAGAAATCAATCTCAAACCAACAACGTGCTGATTTCTCAGCTGTGCCACCTCCAACATAAACCCTATGCTGGGATAACTCGTTTCAACTCTTCTTCTCTCACTTCATTATTGCATTTGGTTGCTGCTGACGGATAATTACCATAGCTCTCCCAGGCTGGTGACACAGGGGTGTTCCCTGATTCAGGGACTGGGTTCCCAGAGCATTAAGACATGATGATGCTTGTATTGCTGCCTTGCAAAAATGAGTTGTGTCATGATGCAAGAGTCATAATCTCACATCTTCAGGTCCTTTAGCACAAGGGCTGGGTTCACTTGTGGATGTTTAGATGTACACTCTGAACTTTCGCTTAGGCCTCTCGACTGTCCTAATTAATTTAGGTGGTAACAGGGGATCCTCTGTCCGCTCAGACTCTCGGTGCCAGCATTCCTCATAGTCAAACCTAATGCTCTAAACAAACGTGTCCCACATTTTTCACCACTGTCATCATTTCTGCAGTGTAGGGACCCTTCCAACCATGGGTACAGCCCTTATGTAATCTCTTTTTAATGTCCTTTTTTCGGTACAAACAGTCCTTGTGGTTGTGCTGCCATGCAACGAAGACATTCCCCTTGCTGCTATCCATACCAGTGTTTCCTTTGCCCTCATTAGGGGGGTTTTAACCCAAACTGAACCTGGATGACTGTGGAATTTGCATTCCAGCTATTGGAACGATCTCTGTAATTTCCATTTGCGAATCGTAATTCTTACTCTAAATTGCAGCGTGGGGTTGCTCTTAAACAGTTGTTACGTTCCATCCCAGCGGCACCCAAACTACCTTTCTGCATGAAGGGATCTCACAGCTCCAACAGGCTGCTAAGAGCTAGCTACCACTTTTGAGCCAGTAATAGTTTTCTAAGTTCCTTTGAGACCCATCTTAATTAAAAAGCACCATAGAAGTATCATATTGTTATCACCATCTTCCAGCCAGCATCTGGAAAACTCTCCTGTAACCTTTCCTTTCAAATTTGCTGTCATTACAAAGCCTTGTGGCTGTGAAACATCCGCCCTTCTGAAAAGAGAGCTCCACGTTCTTGTCATGAGAACACCCTGATAGTTAGGGGTGAAGAGGGGCACAATACTTCCCACTGCTCTGGAGGTCCTCTTTTGCAAAAAGCCAAAGTCGTTTGGGTGCAGCTCGTGGCTCAAGGAAAGATCTGGCATTATGTTGCAAATTTCTTCAGATTGATTACTGGAGCGTGCATAGAAATGGGCAAAAACATGCATTACTCCAAGTTACTGTCTCAAATATGTGAATACTACTACTACTATAGGACCAAGCTCACACCTTTAGTTTCTCGATCAGTAGAAGAGCAAATTGGCTCATCCTGATATACACTTCTCCCTTAGGAGCCTGTACTGCAAAACCCTTCCATGTCTGCTCCCTCATAGAACATGAGCTTCGGCTAATGGCTGCTCTCAGTTGGCTACTGTAGGCTGCCAGGGTGTATGGATGCTGTTTAGAGGGCCAATGGTCTCCTACCTCAACAAAGAACAATTACGGTGATGGTATAAGGACGCTGCTCTTCTGGCCCGGAGATGCCTTTGAGTACATTTGCCTTTTTTTTGTTTGCCCTTTCTTCCTTTTTTTTTTTTTTTACAGGGCAATAAAACAACAATCAAATTGTTTTCCTTCTATAAATAGAGGTTTTCTAAATTGGAACAGCAAGAGTCAATGGCTCTCAGATGCAGCTGTGCTTGATTCAGGCTCAAGAGGATGTTCAGACACGGCAGCAACTGGCACCAGGACAAGAGCCTCCACGGGCAGATTTCCCTGCTCTGAGCTGGCTGACAGTTTGTTGCCTTCTTGCTCTTCATGCTGTGATGCTCTTTTGCTGCTCTTTTCAACTCCCACCCCCAAAGCCAACAATGATCAGGAGAAAAGAGCTGGGTTTGCACATTAAGTTATGATCCTGGCTTGGTGGCAGCGCAACCTTACTACGTTAGCTGCTGGGTTCCCCCACCCCCCACTTCCCCCACCACTTACTGTTGGCCTAAACATGAGACCTTTGGGGTGATACACATTCACCGGAGGATCCCACACCTACAGCGGGTTTTCAGAGGCAGCACTGTGTCGTAGCACAGCCGAGGAGCACAGGGCACTTCTGCTGACTGTGCCATTCCTCAAGAGCTCTGGGAACGCCAGATGGCCTGTAGTTATAGCTGTGCTGTGACCAACCTGCGCACACATGAAACACAGAAAGGTCTTGAGACACGTAAACAAAGGCTTTGTCATGATCTGTGGGGCAGGGAGGTGGTGAGCAGCGGGTGAGCTAACGGGGCAGTGCTCAGCAGCCGGGTCCTGCATGGCCCAGGGATGTCCCCAGCAGTGCCCAGCCCTCCATGGGCTCCAGCTTCCCAGTCCACCTTGCATGCAGCTGTCTGCTCTGCACTTTGCTAGGAAGCCAGTGCAAAACAAAATGCAAATGGCTCCCAGGGAAGGTGCTGATCTAAGCCAAGCATGGTTGGCTACACCTCCTCCCCTCTTCCTTTTGTGTTATTTCTTTCTGTATTTTTTTTTTTTCCAAGCATTCCCCGGCTTCATCATAACATGAAAGCTCTCAATTCAGAGCAAATTAATCCACAATCCTGTCTAAACAGAATTCCTGCCGGAGGCACCGTCCTCTTTGTTGCAACACTCGTCAAACGTCATTCCATAATTACATGAAAACTGTTATTGCTGCAGAGGCACACCCTGGGATGGGCCCCGTGCTGCATACACAGCTGAATTTTGAAACAGGCCTCGTCCCCCTCCAGCTAATGACTCTAATGTGATTAAAAGCAGCACCATGACGGTAGCCTGGTAGGTGGGTGCTTCTGCTGCTGTCTTTGCTGAGGAAGCTGAATCTCCTGCCCCAGCCAGCAGCACTGGCACCTTGTCCCCTGTCAGCACATCATCTCCATCTCAAGCAGTGCCAGCAGTCTGTACTGCCCGGATGCTGCTGCTCAGGGCCCAGTGCAGCAGAGGAAGCACAGCACTCCTCCAGGCACACCATTGCTTATGGGTCTCCCCTCTTCCTGCAG
Seq C2 exon
GCTGAGCTCTCGCTGCAGAAGGAGCAACTGCAGCTGAAGATCATCGAGGTAGAGGATGAAGTGGATAAGTGGCAGAAGGAGAGGGACCGTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006722:ENSGALT00000040837:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=29.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]