DreINT0070469 @ danRer10
Intron Retention
Gene
ENSDARG00000055647 | ftr82
Description
finTRIM family, member 82 [Source:ZFIN;Acc:ZDB-GENE-030219-207]
Coordinates
chr5:30112800-30115072:-
Coord C1 exon
chr5:30114368-30115072
Coord A exon
chr5:30112896-30114367
Coord C2 exon
chr5:30112800-30112895
Length
1472 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTTTTGATTTCATGAACAGAAA
3' ss Score
6.71
Exon sequences
Seq C1 exon
ACCTGTGGAATTCAGAAACCCAAGGCTGTCTGTAGTAAAACACCAGCCACGTAGCATTTGGCTTCTCTTTCTCTCTCGGAAACATTTCAGACGTTGTTTTTTTTTATTGGGAGTAAAAACATGGCTGAGCAAATGTCTCCAGACTACTTCAACTGTCCTCTATGTACGGAGCTCCTGAGGGACCCGGTGGCAATTCCCTGTGGGCACAGCTTCTGCATGGACTGTATCAGTGGATACTGGAACGAGGCTGACTACACCGGCATCTACATTTGTCCCCAGTGTCGGATCACGTTCACCCAGAGACCCGTTCTCAGGCCGAATGCCACTCTCACCAAAGTTGCAGAGAAGATCAAGAAGACCGGCTTAAACTTAACGCCTCCAAGTAATGGAAGCTGTGCTGGGCCTGGGGACGTTCCCTGTGACTTCTGCACTGGACAAAAGCTCAAGGCGGTCAAGTCCTGCCTTAATTGCCTTGCTTCTTATTGCGAAAAGCACCTGAAGCCCCACTATGAGTCTGCCACCTTCAAGAGGCACAAGCTGGTGGATGAGCTGGGGAATCTGGACCGTAAGATCTGCCCTCAGCACCAGAAGAGCCTGGAGTTGTTCTGTCGCACTGACCAGATGTGTATTTGCGCCATCTGTACTGTCAGCGAGCACAAGGGACATGACATAGTGTCAGCCGAAGCAGAAAGAGGGGAAAAACAG
Seq A exon
GTAAGGAAAACATAGCGCTTGAGTAAACTTCACTGAGGTTACTATGAGGCTAAAGCTGAGGCTGTGGGGTTTAAAGCTTTTTCTGTTTTGTTTTAAGTGTATGACAATACTGATTACCTAGAATGTTTTATAAAAGGTGAAAGAAGTCAAAAAGTCAAAAGACATGGAGACACACTTCATAACCGGTTCTGTGCTATCGCAAACACGCTGGTACAGATCATGACAAAAAAAACTGATGAGGAAATATGGAAAAGATAGGGAGGAGATTGTGATTAGTGTGTATGCTGGAGGTTTTTTAGTCATGCACTAAGTTTCCAAGTTGTGGGAGTCACAAAAAGGGTGTGTTGCTTTCTAAAGGACAACTGAGAGGTTATATATTACATAACAACTACTGTCCTTACCTGAAAAAAATCAGTTATTTTGTTGAAAAAATGAATTGTTATGATCAACAAGGGATGGGAAGCGGGGTAGGTCTGGATTCTGGTGTTGGGAGAGGCAAGGAATGTGAATTTGAGAAAATCAGGCGGGAGCTTACGGACCAACCCCAACCTCCCTCTGCGCTACGAGCTAGAAAAATAGCACACTGCTTTTTGTACCTTGACCCAAAGTCATCATAAACCTCAGCAGATGAGTATAGCTAAAAGGATAAGAACAACAATCTCATGAAACTTGAGTTTCACAAAAAAAAAAAAAAAAAGGATATATAAAATAACTGAGGAAACTGATGACACACACAACACTGAAACTATTAATAGATACAGGCCAGATGTTTACAGTTCCATCAGTACATTGCTGCACTGAATGGAAGGAAGACCTTCAAAGGCTTAAGTTTTAAAAGCTTTTCCTTCGATTCATTAGCCCTGACTGAGCTTGAGACGAGGAGGGAGCACTTAATGTGTTTCTGTACAGTTTTGACTAAACAGTCACAGCTGCCGTTCAGATAAAGTAATTATATCTGTAATCTAATGCTTATCACATACACTAATTGCCATTGGTTTGTTTGTTCTGCTAAATGCAGGGAATCCCAGATTTAAGCCCTCATGTCCCATGGCACACACCAAACACACACGCACACACAGAATTTTATTCACCCCCTCCCCAGATTCTCCACATTCCTTCAAGCTTATCTTGAAGAATGGTTCGGTGAGCTTGGCAAGGGGCTGCTCAGAAGCCCCCCTCCTCTTTCCCTAAAGAATCAAGCGTGTGCACCTTGAAATGTCTCTTCGGTGAGCAGACCCAGCTAGTTTTACATTCCTGGCGTGATTAACATTCCCCTCTCTTTTTAAAGATAAAGGTGTCCAAGTGAAGCAGGTTCTTCAAATTCTAGCAAAAAGAGTAAACATAGAATTAACATGAAGATCTGTGACGTGAGAGCATGTATATTATATAACAAAGATGACGATCGATAACAAGAAATATTTTATCTATGTCAACAAACACTAAGCTATGATTTCTTTTGATTTCATGAACAG
Seq C2 exon
AAACTTCTTGGAGTGTCCCAAGCAGAGATCAAACAGAAATGTCAGCAGAGGACCAAAGAACTGGAGGAGCTGAAGACAGCGGTGGACTCTCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055647:ENSDART00000016758:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=22.1),PF0064319=zf-B_box=WD(100=20.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTCAAGTCCTGCCTTAAT
R:
TTTGAGAGAGTCCACCGCTGT
Band lengths:
354-1826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]