BtaINT0005726 @ bosTau6
Intron Retention
Description
LOC526787 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1LZH3]
Coordinates
chr19:56995978-56999219:-
Coord C1 exon
chr19:56998552-56999219
Coord A exon
chr19:56996074-56998551
Coord C2 exon
chr19:56995978-56996073
Length
2478 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
ACCTCACCCTCTCACCTCAGGTC
3' ss Score
10.37
Exon sequences
Seq C1 exon
GGCCAGTCCAGGACCAAGCCCCAGCCCTGCAGCCCACTGCCAAGCTCTCAGGAGCTCCCCAAGGCCAGTTCCTGATGAATGACAGCAGTCTCTGCACGCTGGAGGACCAAGTCCTCTGTCCCGTTTGCCTGGAGGTGTTCCGCAACCCAGTCACCACCGCCTGCGGGCACAACTTCTGCATGAGCTGCCTCCAGGGTTTCTGGGACTACCAGGCCACCATGGGCGAGCCACTCTACTGCCCCCAGTGCCGGGAGAGCTTCCCCACGCGGCCTCGCCTCTGCAAGAACGTCATCCTGGAGGAGATGGTGACATGCTTCACCCAGGCCAAGGGCCAGACCTTGGGGTCCTCACGGAGCCTGGCCGGGCCCAGGGACGTGCCCTGCGACTTCTGTGCCCCTGAGAAGCTCAAGTCCGTCAAGTCGTGCCTGCAGTGCATGGCCTCCCTGTGCGAGAAGCACCTGCGCAGCCACTTAGAGGACCAGGTGTTCCACGGGCACCAGCTGCTGGAGCCCGTGTGGGACCTCAAGAGCCGGCTGTGCCGCAAGCACCGCAAGCTCCGGCGGCTGTACTGCCGCACCGAGGGCTGCTGCGTGTGCGGGGCCTGCCTGCTGGAGGAGCACAAGAACCACGACACCATCCCGCTGGAGGAGGAGCGCGCACGCAAGGAG
Seq A exon
GTGGGGGGAAGTGGGGAGCGGGTGGATGCGGAAGTGGGGGGGGTGGGTGGGGGGAAGGGAGAGGGTGGATGGGGGAGGGGAGGAGGTGGATGGGGGAGGGGAGGGGAGAGGGTGGATGAAGGAGGGGAGGGGCGGGGAGGGGAGGCTGAGGAGCAAGAGGACTCTGTGTTCCAGGCACACCTTTCCAGGAAGGAAAGGATTGTAGCCATTAAAGTGTCCTTAGTCTCTCAGTCATGTCTGACTCTCTGCAACCCCATAGACTGTAGCCTGCCATGCTCCTCTGTCCGTGGGGTTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCGGCCATTAAAATGATGCTCGGAATTCCCTGGTAGCTCAGTCAGTAAAAAAAAAAAAAAATCTGCCTGCAGTGCAGGAGACCTGGATTCGATTCCTGGGTCAGGCAGATCCCTGGAGAATGAAATGACAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGAAGCCTGGCAGGCTACAGTCCATGGGGTCGCAAAGAGCTGGACACCACTTGGCGACTAAACCACCCAAAGTGATGCTCACGAGGGTCCTGGCAAGACATGACAAAGTGCTATCAGATTGATTGAATAAGGATCCAGGGACTTCCCTGGCGGTCCAGTGGTTAAGACTCTGCTTCCACTTAGGGGAATATGGGTTTATCCCTGGTGGGGAAGATCTCTCATGCCGTGCACTGCAATCAAAAAAAAAAAAATTAATAAAATGGTTAGTTCTTTATTTTTTTAAAAAAAGGACCCAAAGTTATTTGTGATGAATCCTACTTAAAAAATTTTTTGCACAGAGAAAGGAATGGCTGAAGGGTATCATATCAAAATACAAACATGTCAGGTTGGGTGAATCCCTTTTTTTCTATTTTCAAATTATGTTTTCTCCATTTGGATTGCTTTCTTCGATGGAGTGCTTATATTTGAAACATTCTATCAAGCATATTCTGCTGCTAAGTCGCTTCAGTCGTATCCGACTCTGTGTGACCCCATAGATGGCAGTCCACCAGGCTCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTAAAGTCGCTCAGTCATATCCGACTCCTAGCGACCCCATGGACTGCGGCCCACCAGGCCCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGAAGCATATTCTAGAACTGTGCTATTCCAACGTAGCCACCTGCAAGAAATAAGCTTGGGCCAGAATGTAAGCCAACTCACCACACTGTTGAGTTCAGCTGACACTTTTTTCACAGCAGGACCTTCTCAACAAAGGGAGAAATGTGTTGATTTACAGCCTGGCACAAGCTTCTTCTTTTGCTGTGGGTCAGCAACAGTTCACAGACAGGTACCTGGAATCCCACTGTCCCACAGTTGATTGTGAATCATGACAGCGGCCGCCCCTGGGATGTGCTTGTGCTCAGTCGCTCAGTCCTATCTGACTCTCTTTGTAGCCTGTCAGACTCCTCTGTCCTTGGAATTTTTCAGACAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAAGGGATTTTCCCGACCCAGGGATCAAACCCGTATCTCCTGAGTGTCTCCCTGTGCAGATTCTTTACCGATGAGCCTCTGGGGTAGCTGAGGCTTATGTGGAAGGACTTGGGGACACAGTTCTGCCTGGACCTGGTGGCACTGACCCAGGGAGCAAAGGACTCCGCATCTGATCGACTCCTGCTCACCCCACTGCCCCCCTCCAAGGCGTCTCAAATCACTGAACCCCTCCATAGCTGCTGCTTGTGATCTGAACCCTATGGTCATCAGCTGTCAGAAGCAGAGAAACTGATTCCTAAGAATGGGGAGTCTCTCAGGGAATGAGAGAGAACAGGAGCAGAGTGGCCCCGAGGGACTTCCTTGGCCGGTCCAGTGGTTAGGACTCTGCACTTCCATTTCAGGGGGCATAGGTTTGATCCCTAGTTGGGGAACTAAGGTCCTACCTGCCTCATAGCCAAAAAAAATAGAGGGGTGTTGGTGGGTCATCTACCCTTCAGCCCTACCCATCCTCATTCAGACCTCTTAAGAACATGAGGTGGGACTTCCCTGGTGGTCCAGTGGTTAAGAATTTGCCCTGCAATGCAGGGGACACAGGTTCAATCCCTGGTTGGGGAACGAAGATCCCACATGCCACAGCTGGAGAGTCCATGTACCGAAAGGAGAGATCTATGTGCTGCAGCTAAGACCTGATGCAGCTAAATAGGGCTGGTTTTTTTTTTAACTGAAGAGGTGCGTTTTTTCTGAGCTCTGACATGGGACTGCCCACAGAGGGCTTCTGCTAGGGCACCTCTCTGAATCACCGGCCCACTCCTCTTCCACCTCACCCTCTCACCTCAG
Seq C2 exon
GTCGAGGTTCGGAAGGTCCAGGCCAACGTGGAGAACCAGATGTTGATCATCACCTCTGACAGCCAAAAGCACCGGGGCCAGGTGGCTTTTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026645:ENSBTAT00000037969:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.7),PF0064319=zf-B_box=WD(100=17.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development