MmuINT0004961 @ mm9
Intron Retention
Gene
ENSMUSG00000070332 | 4933422H20Rik
Description
RIKEN cDNA 4933422H20 gene [Source:MGI Symbol;Acc:MGI:3588186]
Coordinates
chr11:115302395-115306425:+
Coord C1 exon
chr11:115302395-115303059
Coord A exon
chr11:115303060-115306329
Coord C2 exon
chr11:115306330-115306425
Length
3270 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCTGCCCCGCCCCTTCCAGGTG
3' ss Score
11.32
Exon sequences
Seq C1 exon
GATCAGCCCAGGACAAACCCCCCTCACAGCTCTCTTCCCAGCCCTCCAGAACCCCGCTCCATCTCCTGATGGGCAGCAACAGCAGTCAGCACATGTTGGAAGACCAAGTCCTCTGTCCCATTTGCCTGGAGGTGTTCTGCAACCCAGTCACTACCGCCTGCGGCCATAACTTCTGTATGACTTGCCTTCAGAATTTCTGGGACCACCAGGCTGCCATTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTCTCCAGCAGGCCCCGCCTCTGCAAGAACGTCATCCTCGGGGAGATGGTGGCTTGCTTCACCCAGGCCAAGAGCCAGACCTCAGGGTCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCGCAGAAGCTGAGGGCAGCCAAGTCATGCCTGCAGTGTGTGGCTTCCTTGTGTGAGAAACATCTGCGCAGCCACTTTGAGGACCAGCTGTTCCAGGACCACCAGCTGTTGGACCCAGTGTGGGACCTCACGAACCGCTTGTGCCGCAAGCATCGCAAGCTCCGGCAGCTGTATTGCCGCACGGAGGGCAGCTGCGTGTGCGGAGCCTGCCTATTGGAGGAGCACAAGAACCATGACACCACCCCCCTGGAGGATGAACGGGCCCGCAAAGAG
Seq A exon
GTGAGGTGGGCTGAGGAAAGGGCGTGCTCCAGGCTCTGAGAATCTGTCACATTTCGGGGGGTGGGGATGAACACAGCTGAAGCCAGGTTTTTCTGGCACCTAATATGGAAAGGCAGGAGTTTGAGAGGAGAACCTGTCTGAAAAGATGCTTAGGCAGGGCCGGCGAGATAAATGGATGCTTTCTACCCTAAGTTCCATCCTCAGAATCTACATTTAAGTGGAAGGAAAGTGGGGCGTGGTGACGCGCGCGTCTTTAATCCCAGCCTGTGGAAAGCAGAAGCAGATGGTTGTGAGTTTGAGGCCAGCCTTGGCTATGTAGTGAGTTTCAGGATAGTCAGAGCTGCATAGCGAGCTTTTAAGATTTATTTTTTTTATGTATATGAGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCATCATATGGTTGCTGGAAATTGAACTCAAGACCTTCAGAAGAGCAGTCAATGCTCTTAATCACTGAGCCATCTCTCCAGGCCGAGACCCAACTCCTCAAAGCTGTCTATTGGTGCCCACACGCCCCTACAATAATAATACTTTTTTGAAGTTAGGCAGCTGCTAGCGTGATGGGTTATGTTATGGCACAAGAAAGCATTGGTAAGTTAATAAGGAAGGCTGCAGAACTGCTGGTCAGAAGTCTCTATGAATAGTGAATGATGTGTTGTTATGGGTAGGAAAGATTGTTTACAAGTCTCCCTTAGAGATGCATCCAGGAAACACCTGTGCAGGACGCACCTGCGCCTTTCTCCTCCCAAGAAGCCGCAGAAGACAGTAGCTGGAGAGATGGCTCAGCAGCTAGGAGCACAAACCAGAGGACCCCGGCTTTGACTCCCACCACCCACATGTTAGCTCACAACTGTAACTCCAGTTCCCTGGGAGTATGCAAAACATCCATACACATAAAATAAGAGACAAAAAAAAATTTTGTTTTGTTTTGTTTTTTTTTTTCGAGACAGGGTTCCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAATCTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTAAGATTAAAGGCGTGCGCCACCACTGCCGGGCTGCTTTCTAATTTTTAAATTCCTTTTCTTGGTTTTGTTTAAAACAGTCCTCCCTGCCCATCACCATGTGTAGCTCACCACAGTCCTTCACAACCCTTCATTAAGCATCGCTCCCGGATCCAAGCGCTTGTGTGGCAGGCCTCAGAGGAAGGCATGGCTTCTGAGAAATTAGCCTCAATGGTTGTATAGCAACAGGTTATTATGAAAACAAAAAGAAGCATTCTTTTAAAATAGGATTTCCAGGCTATCTAGGCTTAAACATAATGTGCATGCCCCTGTAGTGAGTCTGTTTCCAACATTTGGGACGCGAAGCAGGGAGATGGCTTTGGGTTCAAGCCTAGCCTGGTCTACATAGCTAGTTTCAAGCTGAAGGGCTACATAGCGGACCCTCATTTCAAAAACAGGACAAGGGCCTGGAGAATGGCTCGGTCATTAAGAAACCTGGGTTCAGTTATGTGGCTCACAACTCTAGCCGTAAGGGATCCAAAACACTTTTCTGGTCTCCACCGGCACGCACAGGGTACACAGACATTACATCTAGGCAAAGACATTAAAAAAAAAATTACAATAAAATAAAACAAAGCCAAAACTGGGCATAGTGGTATGTGCCTGGAGCATTAGCAGTAAATAGCTTAGGCAAGAGGACCCCAAGTTCAAGGTCATCTCGGCTACATAAACTTGCTCCTCCTTCCCCCCACATTAAAAACAAACAAACAAACAAACAAACAGGTTTAGGAGGTTGCTCAGTAAGTAAAGTGCTTGATTCTATGGCACAAGAACCTGAGTTTAACCCCCAAGTTAAAACAGCCAGCCAGGCTGGGCGGTGGTGGTGCACGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAAGCGGATTTCAGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAGAACAAAACAAAACAACCCAGCCAGCCAGGCACCGTGCTTGCACACTCTAATCCTGGCACTGGGGAGGTAGAGCCAAGAGGATCCCCGGGACTTGCTGCCAGCCTAGTCTAGCGGAAGCAGTGAGTTCTAGGTTCAGTGAGAGAGCCTGTCTCAGAAAATAAGGAAGAGAGAGCTGGAGAGATGGCTCAGAAGTTAAAAAGCACTGTTCCTGCAGAGGGTCTGGACTCAGTTCCTAGCACCACTTCTGTAACTCCAGTTCCAGGAGATCTGAACCAGGCACACATGTGTGCATCTACATACATACAGGCAAAACATACACTATATATATATATGTATATTCATACCCACATACATTTTCAAGACAAGGTTTTTGGTGTAGCCCTGGCTGTCCTGAAACTCACCCTGTAGTCTAGGCTGGTCTCGAACTCACAGAGATCCACTTGCTTCTACCTCCCGAGTGCTGGCATTAAAGGTGTGTGCCCCACTGCCTGGCTGAGCTCATTATATTTCAGTTAGTCCATCAAGTACATTAGATAACCTTGCTATCCTGATTCCTAGGAAAGAGGAGCCAGAATCTCAGGCAGTGACAGAACAAAACAGCCAGGCATAATGGCACACACCTTTAATCCCAGCACTTGGGATGCAGAGGCAGGCAGATCTCTGAGTTAGAGGCCAGCCTGGTCTACAAAGCCAGTTCCAGGCTAGCCAGGAATGTTCCACAGAGAAACAGTGTCTCAAAAAAAGAAAGAAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAAAGGAAGAAAGGAAGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGAAGGGAAAGGAAAGGAAAGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTATAGAGGTCCTGAGTTCAATTCCAAGCAAGGACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTATTCATATAAATTAAATAAATCTTTAAAAAGAAAAGAAGGAAAAGAAAAGACAAAAGGAGATACACTTGCTCTTCTACCCTGGTCTTGGGTTCACTAAAGCCTGTGAATTGGCAGTCAGATCTCTCCAAACCACCCTCTGAGTCAGGGCGCTCACTCACTTCTGCCCCGCCCCTTCCAG
Seq C2 exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAACCAGATGCTGATCATTGCCTCTGACAGTCAGAAACACCAGGGACGAGTGAGTTTTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070332-4933422H20Rik:NM_001033775:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: