GgaEX0001367 @ galGal4
Exon Skipping
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:441595-442668:-
Coord C1 exon
chr17:442567-442668
Coord A exon
chr17:441912-442097
Coord C2 exon
chr17:441595-441813
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCGTTGGTCCTCTTGCAGAAG
3' ss Score
8.58
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGTACCGCCTGCTATTTGGGGCCTCTCCTTTGGCACCTGATGACACCCATGAGCGAGACCTGTGGGATCGGTTTGGACGCGGTGAGATGGCACAGCTGGAG
Seq A exon
AAGAGCCTCCCCAGTGGCTGGAAGAGCCTGCGGGAGGGGCTGGTCCACAGGGCCCTGCGCGACCCCTCTGCAGCCTTGCAGCGGCCGGCGCTGCTCCGCCTGCTGTCCCAGGCCCTGGGCCTTACCAGTGCCGCCGCAGCCCCCGCTGGCTCTTACAATCCCCAGGCCTTTGTTGCTGAGATGGAG
Seq C2 exon
CGCGTCCTCTTCACTGCACCGGTTCTGGAGCAGCTGACGTGTGAGCAGAGCTCGGGGACGCTGCGCCGCCTCCTGCGTGTGGCTCCCAGCCAGCAGCCGCTGCTGCAGGCGTACCGCGTACTGGTGTGCAACGGCAGCCAGGCAGCCCGCAAGGAGCGCTTTGCTCAGCTGGCTGCCGAGCTGCGGGACCAGATGGACACCCCCAAGATTGTCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000040507fB142
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTGTGGGATCGGTTTG
R:
ATCTTGGGGGTGTCCATCTGG
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]