GgaEX0001366 @ galGal4
Exon Skipping
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:440616-442668:-
Coord C1 exon
chr17:442567-442668
Coord A exon
chr17:441595-441813
Coord C2 exon
chr17:440616-440947
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCACGCTCCCCTGTCTACAGCGC
3' ss Score
8.31
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGTACCGCCTGCTATTTGGGGCCTCTCCTTTGGCACCTGATGACACCCATGAGCGAGACCTGTGGGATCGGTTTGGACGCGGTGAGATGGCACAGCTGGAG
Seq A exon
CGCGTCCTCTTCACTGCACCGGTTCTGGAGCAGCTGACGTGTGAGCAGAGCTCGGGGACGCTGCGCCGCCTCCTGCGTGTGGCTCCCAGCCAGCAGCCGCTGCTGCAGGCGTACCGCGTACTGGTGTGCAACGGCAGCCAGGCAGCCCGCAAGGAGCGCTTTGCTCAGCTGGCTGCCGAGCTGCGGGACCAGATGGACACCCCCAAGATTGTCAGCAGG
Seq C2 exon
CTGCAGCTGGATGAGGTGAACAGCACAGCAGCCCAGCACCAGCTCCGCACCCTCCTGGAGGACCTCGTGGAGATGGAGAAGGTTCTCCGTGACATGGACATCCTCTCAGCGCTGGCCAGGCTGCTGCCCAGGGGGGCCTGTGCCACCAAGGCTCCACCGCCCACAGCCAACAGCACCGGCTGGGCCAGCACGAACGCCACTGCCAGCAATACCACGACGGAGGAGGAGGGTGCCGGGGGGGACCCAGCGGACGGTGACAATCCCCAGGGGCAGTTCTCAGCCTTTGTGCAGCTCTGGGCTGGGCTGCAGCCCATCCTCTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.058 C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGATGACACCCATGAGC
R:
CTCCTCCTCCGTCGTGGTATT
Band lengths:
296-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]