MmuEX6099539 @ mm9
Exon Skipping
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25289484-25290777:+
Coord C1 exon
chr2:25289484-25289594
Coord A exon
chr2:25289829-25290047
Coord C2 exon
chr2:25290410-25290777
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCCCCATGCCTTGCCCACAGGAG
3' ss Score
10.38
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTATCGCTTGCTTTTTGGTCCTTTGCCTGACCTGGATGGAAAGTTGGGTTTCCTTAGGAAGCAGGAGCCCTGGAGCCGCCTGGGTAGCAATCCTCTGCTCCAAATGGAG
Seq A exon
GAGCTGCTGCTGGCTCCTGCCCTTTTGGAACAGCTCACATGTGCTCCAGGTTCTGGGGAACTGGGCCGGATTCTTACCATGCCTGAGGGTCATCAGGTAGACCTTCAGGGCTACCGGGATGCTGTGTGCAGTGGGCAGGCTACAGCTCGTGCCCAGCGCTTCAGCGATTTGGCCGCTGAGCTCAGGAACCAGCTGGACACAGCCAAGATTGCTCAGCAG
Seq C2 exon
CTGGGCTTCGATGTCCCCAACGGCTCAGATCCCCAGCCACAGGCACCGTCCCCACAGAGCCTGCCGGCACTCTTAGGGGACCTGCTGGATGCCCAGAAACTTCTGCAGGATGTGGATGTCCTATCAGCCCTTGCCCTGCTGCTGCCTCAAGGTGCCTGTGCTGGCCAGGCCTCTGCACCTCAAGCCAGCAGCCTGAATGGCCTGGCCAACAGCACCGGGATAGGTGCAAATTCAGGTTCCAACACCACTGTTGAGGAGGGCACCCAGTCACCTGTCAGCCCAGCCTCTCCTGACACTCTGCAAGGGCAGTGCTCAGCCTTTGTGCAGCTCTGGGCTGGCTTGCAACCCATCTTGTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTAGGAAGCAGGAGCCC
R:
TGAATTTGCACCTATCCCGGT
Band lengths:
294-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: