MmuEX6099539 @ mm10
Exon Skipping
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25433964-25435257:+
Coord C1 exon
chr2:25433964-25434074
Coord A exon
chr2:25434342-25434527
Coord C2 exon
chr2:25434890-25435257
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCCCTTTTGGAACAGCTC
3' ss Score
7.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTATCGCTTGCTTTTTGGTCCTTTGCCTGACCTGGATGGAAAGTTGGGTTTCCTTAGGAAGCAGGAGCCCTGGAGCCGCCTGGGTAGCAATCCTCTGCTCCAAATGGAG
Seq A exon
CTCACATGTGCTCCAGGTTCTGGGGAACTGGGCCGGATTCTTACCATGCCTGAGGGTCATCAGGTAGACCTTCAGGGCTACCGGGATGCTGTGTGCAGTGGGCAGGCTACAGCTCGTGCCCAGCGCTTCAGCGATTTGGCCGCTGAGCTCAGGAACCAGCTGGACACAGCCAAGATTGCTCAGCAG
Seq C2 exon
CTGGGCTTCGATGTCCCCAACGGCTCAGATCCCCAGCCACAGGCACCGTCCCCACAGAGCCTGCCGGCACTCTTAGGGGACCTGCTGGATGCCCAGAAACTTCTGCAGGATGTGGATGTCCTATCAGCCCTTGCCCTGCTGCTGCCTCAAGGTGCCTGTGCTGGCCAGGCCTCTGCACCTCAAGCCAGCAGCCTGAATGGCCTGGCCAACAGCACCGGGATAGGTGCAAATTCAGGTTCCAACACCACTGTTGAGGAGGGCACCCAGTCACCTGTCAGCCCAGCCTCTCCTGACACTCTGCAAGGGCAGTGCTCAGCCTTTGTGCAGCTCTGGGCTGGCTTGCAACCCATCTTGTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-'19-19,'19-18,20-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTTGCCTGACCTGGATG
R:
CACAGGCACCTTGAGGCAG
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types