BtaEX6047625 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047254 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr11:106211210-106212472:+
Coord C1 exon
chr11:106211210-106211296
Coord A exon
chr11:106211571-106211789
Coord C2 exon
chr11:106212105-106212472
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCACCCTGCCCCCAGGAG
3' ss Score
10.43
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTATCGCCTGCTTTTTGGCCCTTCGCCTGGCCTGGATGGGGGTTCAGGGCCCCCCAGGAATCAGCAGCCCCTGTTCCGGATGGAG
Seq A exon
GAGCTGCTGCTGGCCCCTGCTCTCCTGGAGCAGCTCACGTGCATGCCAGGCTCCAGGGAGCTGGGCCGGGTCCTCACTGTGCCCCGGGGTCAACAGACAGCACTGCAGGGATACCGGGACGCAGTCTGCAGAGGGCAGGCTGCAGCCCGTGCTCACCGCTTCTCGGGGCTGGCTGCCGAGCTCCGGAACCAACTGGATGCAGCCAAGATCGCCCAGCAG
Seq C2 exon
CTGGGCCTGGATGCCCCCAGTGGCTCTGCCGCCCCACAGCAACCGCCACCCCCACCGCGGCTGCAGGCACTCCTGGAGGACCTGCTGGATGCCCAGAAGGTCCTGCGGGACGTGGACGTCCTCTCAGCCCTTGCCCTGCTGCTGCCTCAGGGCGCCTGCGCAGGCCGGGCTCCTGGGCCCGCAGCCAGTGGCCCTGGCGGGGCCGCCAACAGCACTGGGGCTGGGGCAGGCCCCGGCTCCAACAGCACAGCTGAGGAGGGGGCCCCGCCCGCTGCAGCCCCGGCCCCCTCGGACGCGCTGCAGGGCCAGTGCTCCGCGTTCGTGCAGCTCTGGGCCGGCCTGCAGCCCATCCTGTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047254-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.110 C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCGCCTGCTTTTTGGCCC
R:
CAGCCCCAGTGCTGTTGG
Band lengths:
308-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]