RnoEX0004848 @ rn6
Exon Skipping
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2654196-2655489:+
Coord C1 exon
chr3:2654196-2654306
Coord A exon
chr3:2654542-2654760
Coord C2 exon
chr3:2655122-2655489
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTGCCTTGTCCCCAGGAG
3' ss Score
11.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTATCGCTTGCTTTTTGGTCCTTTACCTGACCTGGATGGAAAGTTGGGGTTCCTCAGGAAGCAGGAGCCCTGGAGTCACCTGGGTAGCAATCCTCTGTTCCAAATGGAG
Seq A exon
GAGCTGCTGCTGGCTCCTGCCCTTTTGGAGCAACTCACATGTGCTCCAGGCTCTGGGGAGCTGGGCCGGATTCTTACCATGCCTGAGGGTCATCAGGTAGACCTTCAGGGCTACCGGGATGCTGTCTGCAGCGGGCAGGCTACAGCTCGTGCCCAGCATTTCAGTGATCTAGCCACTGAGCTCCGGAACCAGCTGGACATAGCCAAGATTGCCCAGCAG
Seq C2 exon
CTGGGCTTCAATGTCCCCAACGGCTCAGATCCACAGCCGCAGGCACCGTCCCCACAGAGTCTGCAGGCACTCTTAGGGGACCTGCTGGATGTCCAGAAGGTTCTACAGGATGTGGATGTCCTATCAGCCCTTGCCCTGCTGCTGCCTCAAGGTGCCTGTGCTGGCCGGGCCCCCGCACCTCAAGCTGGCAGCCCGAGTGGCCCGGCCAACAGCACCGGGGTAGGGGCAAATACAGGTCCCAACACCACCGTTGAGGAGGGCACCCAGTCACCTGTCACCCCAGCCTCTCCGGACACTCTGCAAGGCCAGTGCTCAGCCTTTGTGCAGCTCTGGGCTGGCTTGCAGCCCATCTTGTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.537
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCAGGAAGCAGGAGCC
R:
GTTGGGACCTGTATTTGCCCC
Band lengths:
303-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]