DreEX6010767 @ danRer10
Exon Skipping
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24639380-24652563:-
Coord C1 exon
chr5:24652453-24652563
Coord A exon
chr5:24643794-24644015
Coord C2 exon
chr5:24639380-24639732
Length
222 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTATATTTTTTCAGGGA
3' ss Score
9.72
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTATATAATCTCATCTTTGGGACGTATCCCAAAGCGGGATCAAAGGGAGGAGAAAGAGATGAAGGACAGCACCAACTCAACAGTCCTGGAGAGAAGCTTGTACAGCTGGAG
Seq A exon
GGAGTTCTGTTGACTGGTGCAGTGCTTGAAAGCCTTACCTGTGGGGAAGGAGGGAACAGTGAGATTGGCAAAATCCTATTGGTCCCTGAGAAACAACAGGCGGTTTTACAGGCTTACCGCACGACTGTTTGTGGTTTAGGGGCGGGGCAGAGGGCGGAGCTTTTCAGACAGTTGAGTGAAGAACTGAGAGATCAGATTGACACACAGAGAGTCTTTGATCAG
Seq C2 exon
TTGCGTCTTGAGCAGTCTAATATGTCTGGTCTGCTGGATCAGTCCCGTCTCGGGGCTCTCCTGAAGAACCTGGCTGATGTGGAGCGGCTGCTGAGGGACGTGGATCTACTGTCAGGTCTGGCCAGACTGCTGCCGAAAGGGGCCTGTGCGGGTCACCAGCCTCCTCCTCAGGCCAACACCACCTCCTGGAGCTCCAACTCTACCACATGGGGTCCCAATACAACTGACAGTTCTGTGGAGGAAGGAGAAGGAGCTTCTGAGAGCGAGGCAGAGGCTGAAAACCCCAAATCACAGTTTTCTGCATTTGTTCAGCTGTGGGCAGGACTTCAACCCATACTTTGTGGGAATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500-'8-15,'8-14,11-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.007 C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACCAACTCAACAGTCC
R:
AGCTCCTTCTCCTTCCTCCAC
Band lengths:
301-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]