GgaEX0001682 @ galGal3
Exon Skipping
Gene
ENSGALG00000001474 | RAB14_CHICK
Description
NA
Coordinates
chr17:9086956-9088645:-
Coord C1 exon
chr17:9088592-9088645
Coord A exon
chr17:9088110-9088181
Coord C2 exon
chr17:9086956-9087133
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGCATTGTCATTCTCTGTAGCTG
3' ss Score
6.93
5' ss Seq
ACTGTAATA
5' ss Score
-4.56
Exon sequences
Seq C1 exon
GGGACATGGGTGTAGGAAAGTCCTGTTTGCTTCACCAATTCACGGAAAAGAAAT
Seq A exon
CTGCTGTGACTCATGACACTAGGACTGCTCCTGCGTGATGGTGTTCAAGGCTTTCAGCATTCCGTCTCAACT
Seq C2 exon
TTATGGCGGACTGTCCCCACACAATTGGTGTTGAATTTGGCACAAGAATAATTGAAGTTAGTGGCCAAAAAATTAAACTACAGATCTGGGATACAGCAGGACAAGAGAGATTCAGGGCTGTCACACGAAGCTATTACAGAGGAGCAGCAGGAGCTCTCATGGTCTATGACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474-'6-6,'6-4,8-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(11.1=100)
A:
PF0007117=Ras=PD(27.3=69.2)
C2:
PF0007117=Ras=FE(36.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATGGGTGTAGGAAAGT
R:
CGTGTGACAGCCCTGAATCTC
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]