GgaEX0001682 @ galGal4
Exon Skipping
Gene
ENSGALG00000001474 | RAB14
Description
Ras-related protein Rab-14 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKU5]
Coordinates
chr17:8382300-8383989:-
Coord C1 exon
chr17:8383936-8383989
Coord A exon
chr17:8383439-8383525
Coord C2 exon
chr17:8382300-8382477
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGCATTGTCATTCTCTGTAGCTG
3' ss Score
6.93
5' ss Seq
CATGTATGC
5' ss Score
3.56
Exon sequences
Seq C1 exon
GGGACATGGGTGTAGGAAAGTCCTGTTTGCTTCACCAATTCACGGAAAAGAAAT
Seq A exon
CTGCTGTGACTCATGACACTAGGACTGCTCCTGCGTGATGGTGTTCAAGGCTTTCAGCATTCCGTCTCAACTGTAATATTTCTTCAT
Seq C2 exon
TTATGGCGGACTGTCCCCACACAATTGGTGTTGAATTTGGCACAAGAATAATTGAAGTTAGTGGCCAAAAAATTAAACTACAGATCTGGGATACAGCAGGACAAGAGAGATTCAGGGCTGTCACACGAAGCTATTACAGAGGAGCAGCAGGAGCTCTCATGGTCTATGACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474_MULTIEX1-3/5=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(11.1=100)
A:
PF0007117=Ras=PD(27.3=69.2)
C2:
PF0007117=Ras=FE(36.4=100)
Main Inclusion Isoform:
ENSGALT00000002236fB183
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATGGGTGTAGGAAAGT
R:
CGTGTGACAGCCCTGAATCTC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]