GgaEX0002485 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2714608-2718603:-
Coord C1 exon
chr21:2718397-2718603
Coord A exon
chr21:2716843-2716917
Coord C2 exon
chr21:2714608-2714829
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTTGTGTTTTACAGTGT
3' ss Score
10.62
5' ss Seq
GAGGTCGGC
5' ss Score
3.97
Exon sequences
Seq C1 exon
ACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAACCGCCGTGGCACGGCGCGCTGCTCCTGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGTGCCCGCGACAGCCGCACCTACAGCAACGACTGTGAGCGGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTGTG
Seq A exon
TGTTGCCTGTTTGGAGGAAGGAGTTGTGTCCTCGCAGCACCCTCCTGCTCCCTACCCGGACATCTCTGCTAGGAG
Seq C2 exon
ACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'11-14,'11-13,12-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=68.6)
A:
NO
C2:
PF0764810=Kazal_2=WD(100=54.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACTTGTGATGGCACCT
R:
GCCCCAAAAGTGCACTCCAC
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]