GgaEX0002485 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2729886-2733881:-
Coord C1 exon
chr21:2733675-2733881
Coord A exon
chr21:2731917-2732050
Coord C2 exon
chr21:2729886-2730107
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTGCTCCCTTCCTCTCCAGTTT
3' ss Score
9.64
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAACCGCCGTGGCACGGCGCGCTGCTCCTGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGTGCCCGCGACAGCCGCACCTACAGCAACGACTGTGAGCGGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTGTG
Seq A exon
TTTTCCTTAAGAGTCCCGGAACAGAGAGGTTCCCCCTGTTCTGCTCCCATCCCCTTGACCCACACGCTTCCTGCCGGAACGGAGGATGCTGACTGTGCCTTGATCCTTAGAGGCAGATGAGAGTGGGAGCAGAG
Seq C2 exon
ACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=68.6)
A:
NO
C2:
PF0764810=Kazal_2=WD(100=54.7)
Main Inclusion Isoform:
ENSGALT00000003171fB270
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGCCATCCCAGTGAAG
R:
CCCTTGTGCTTCACCCTGATC
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]