GgaEX0002637 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1402785-1407373:-
Coord C1 exon
chr8:1407290-1407373
Coord A exon
chr8:1404408-1404515
Coord C2 exon
chr8:1402785-1402817
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCACTTTCTTCTGCTGCTAGCTT
3' ss Score
6.63
5' ss Seq
CTGGTAGAG
5' ss Score
1.5
Exon sequences
Seq C1 exon
GTAAATGAACATTTGAAAGACATAATGGAACAGGAACAAAAACTTAAAGAGCATCACAGTGCAGAATCTGCAGGAGGTCAGAAG
Seq A exon
CTTCCTGTAGAAGATAAGAGAGGAAGGAGTATGTATGCTTTTTAGCTCCAGGTAGTCCCCTGTGGATCTTGACCTGCCGGTGCTTTGTGGTAATCTCATCTGTTTCTG
Seq C2 exon
TCTCCTACCAAATGGTATTGGAAACTGGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'3-5,'3-4,4-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.452 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.1=100)
A:
NO
C2:
PF0030726=CH=FE(6.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGGAACAAAAACTTAAAGA
R:
GAACCAGTTTCCAATACCATTTGG
Band lengths:
90-198
Functional annotations
There are 0 annotated functions for this event