GgaEX0002636 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1398322-1407373:-
Coord C1 exon
chr8:1407290-1407373
Coord A exon
chr8:1402785-1402817
Coord C2 exon
chr8:1398322-1398463
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCCTACTGCTTCCTCTGAAGTCT
3' ss Score
4.58
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTAAATGAACATTTGAAAGACATAATGGAACAGGAACAAAAACTTAAAGAGCATCACAGTGCAGAATCTGCAGGAGGTCAGAAG
Seq A exon
TCTCCTACCAAATGGTATTGGAAACTGGTTCCT
Seq C2 exon
GCCCGTTACAGGAAGGAACAAACATTGCTCAAGCAGCTGCCTTGCATTCCATTGGTGGAAAATTTGCTGAAAGATGGTACAGATGGTTGTGCTTTAGCAGCCCTCATCCACTTCTACTGTCCAGATATCGTTAAACTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'3-9,'3-5,5-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.452 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.1=100)
A:
PF0030726=CH=FE(6.3=100)
C2:
PF0030726=CH=FE(29.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCTGCAGGAGGTCAGA
R:
AGCACAACCATCTGTACCATCT
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event