RnoEX0016548 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53175500-53179800:-
Coord C1 exon
chr13:53179717-53179800
Coord A exon
chr13:53179139-53179171
Coord C2 exon
chr13:53175500-53175641
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCGCCATGCTTCCTCTGAAGTCT
3' ss Score
4.32
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACACGGCTGAAGCTCCAGGAGGTCAAAAG
Seq A exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCA
Seq C2 exon
GCTCGTTACAGGAAGGAGCAAACACTGCTTAAGCAACTGCCTTGCATTCCATTGGTGGAAAACTTGTTGAAGGACGGCACGGATGGCTGTGCGCTGGCTGCCCTCATTCACTTCTACTGCCCTGCTGTTGTCCGACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.1=100)
A:
PF0030726=CH=FE(6.3=100)
C2:
PF0030726=CH=FE(29.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTAAAGAGCACCACACGGC
R:
CGTGCCGTCCTTCAACAAGTT
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]