MmuEX0009010 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138189857-138194402:-
Coord C1 exon
chr1:138194319-138194402
Coord A exon
chr1:138193861-138193893
Coord C2 exon
chr1:138189857-138189998
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCTCCATGCTTCCCCTGAAGTCT
3' ss Score
5.14
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACCCAGCTGAAGCTCCAGGAGGCCAAAAG
Seq A exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCA
Seq C2 exon
GCTCGTTACAGGAAGGAACAAACACTGCTTAAGCAACTGCCTTGCATTCCATTGGTGGAAAACTTGTTGAAGGATGGGACCGACGGCTGCGCACTAGCTGCCCTCATTCACTTCTACTGCCCTGCTGTTGTCCGGCTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'4-8,'4-5,5-8
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.664 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(16.5=100)
A:
PF0030726=CH=FE(6.3=100)
C2:
PF0030726=CH=FE(28.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGAGCACCACCCAGCTG
R:
CGGTCCCATCCTTCAACAAGT
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types