GgaEX0002636 @ galGal4
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr8:1387332-1396383:-
Coord C1 exon
chr8:1396300-1396383
Coord A exon
chr8:1391795-1391827
Coord C2 exon
chr8:1387332-1387473
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCCTACTGCTTCCTCTGAAGTCT
3' ss Score
4.58
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTAAATGAACATTTGAAAGACATAATGGAACAGGAACAAAAACTTAAAGAGCATCACAGTGCAGAATCTGCAGGAGGTCAGAAG
Seq A exon
TCTCCTACCAAATGGTATTGGAAACTGGTTCCT
Seq C2 exon
GCCCGTTACAGGAAGGAACAAACATTGCTCAAGCAGCTGCCTTGCATTCCATTGGTGGAAAATTTGCTGAAAGATGGTACAGATGGTTGTGCTTTAGCAGCCCTCATCCACTTCTACTGTCCAGATATCGTTAAACTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145_MULTIEX1-2/9=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.321 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.1=100)
A:
PF0030726=CH=FE(6.3=100)
C2:
PF0030726=CH=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCTGCAGGAGGTCAGA
R:
AGCACAACCATCTGTACCATCT
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]