DreEX6099100 @ danRer10
Exon Skipping
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22340661-22347686:-
Coord C1 exon
chr22:22347603-22347686
Coord A exon
chr22:22341579-22341611
Coord C2 exon
chr22:22340661-22340802
Length
33 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTGACCGCCTGAAGTCT
3' ss Score
1.64
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGAATGAATACTTGAAGGAAATCATAATGCAGGAGCAAAGGCGGATGGAGGCGCAGAACGCAGAGCCTGTTGAGAATCCAAAG
Seq A exon
TCTCCAACCAAGTGGTACATGAAGCTGGTTCCT
Seq C2 exon
GCGCGTTACAGGAAGGAGCAGGTTCTGCCCAAGTGTTTACCGTGGATCCCTCCGGTGGACAACCTGCTGAAGGACAGCACAGATGGCTGTGCTCTCGCCGCCCTGCTGCACTTCTACTGCCCCACCACCGTCAGCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF102214=DUF2151=FE(23.5=100)
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCAGAGCCTGTTGAGAA
R:
GCCATCTGTGCTGTCCTTCAG
Band lengths:
115-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]