GgaEX0002826 @ galGal3
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
NA
Coordinates
chr14:15687079-15687802:+
Coord C1 exon
chr14:15687079-15687161
Coord A exon
chr14:15687335-15687484
Coord C2 exon
chr14:15687561-15687802
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCATGTCTGTACTTCTTAAGATC
3' ss Score
5.12
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
AATTGGAGCTGTAGAGTGAATAAAGTGAAGCGTTTGTTCCAAAGTGATTGGCGAGCTGGGGCTGCCTCTCTGTTCTATCACAG
Seq A exon
ATCCTCAATGGAGTTTATGAAACAAGGAGCCTTCAAATGATGGCGATGCTTACAGCAGAACAGGCTGGGAGTGAAGCGTCAGGAAGCTTTAGCTAAAAGCACAGAGCACCAAATTGTGCCTTTGGGTCAGCAGCTGTGCCTCTGCATTTG
Seq C2 exon
TAACAGGAATCACCACAGACGACAGAGAGGTGAAACGATGTCCAAGTTGCCAAGCCTCTTGCAGTGATGTGGGGGCATGTGTTAGGAATCAGATTCTGCAGTAGCTGTGGTTCTGTGCACCAAGTTCTGTGCACCAAGGTGGTGGAGGGCCTGCTCTTCCCAGAGGACAGCAGTGACCCTGCTCCTAACTGTTCTGGTCTGATGTCAGGGTACATTCAGCAACTGGAGCTCCAGGTTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-'5-5,'5-4,6-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGCCTCTCTGTTCTAT
R:
GGAGCTCCAGTTGCTGAATGT
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]