GgaEX0002825 @ galGal3
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
NA
Coordinates
chr14:15683308-15688931:+
Coord C1 exon
chr14:15683308-15683550
Coord A exon
chr14:15687079-15687161
Coord C2 exon
chr14:15688773-15688931
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGATTTTATTTCTTTCCCAGAAT
3' ss Score
8.55
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CTGAACGTGAGAAGGCATTTCTAAGTCTCTGAAATGACGAGTGGCAAGGCTGCACGGCTGGTGGCAAGCTCACCTTGCCATAGAGTTCACCTGAAATCTGCTGGCTTTGTAACAACTACTTAAGAGATATTTAAAGAAGCTTTTTCGTGTTTCCTTTCCTCACCGCCTCTCCGCAGCTGCAGTCAGCATTTGTGTTCCTTCTGAGGCTGGCAAAGCGCGCTCTGCTCATCCCATGCAAATCAG
Seq A exon
AATTGGAGCTGTAGAGTGAATAAAGTGAAGCGTTTGTTCCAAAGTGATTGGCGAGCTGGGGCTGCCTCTCTGTTCTATCACAG
Seq C2 exon
ATGACAGCAGTCATGCGACAAGAAGTGCTGGGCCTCTACCGCAAGATATTCCGGATAGCCAAAAAATGGCAGTCAGCATCAGGACAGGCGGAAGAAACTACTGCAGAGAGGGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-'1-8,'1-3,5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTTTCCTCACCGCCTC
R:
GTCCTGATGCTGACTGCCATT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event