GgaEX0002825 @ galGal4
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
LYR motif containing 1 [Source:RefSeq peptide;Acc:NP_001155848]
Coordinates
chr14:14966742-14973054:+
Coord C1 exon
chr14:14966742-14967673
Coord A exon
chr14:14971202-14971380
Coord C2 exon
chr14:14973006-14973054
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGATTTTATTTCTTTCCCAGAAT
3' ss Score
8.55
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCCCGGGGCACGAGGAGGGGGCGGGAGGAGCGCTCAGAGCGGAGTCCCGGGCCGCCCTCTGGGCGCACGGCGCTGCTCGGCTCCGAGCGGGGCTATGGACGAGTGCGTCAGTGAGCGCTGGGTTTTATGGCTCCGCCTCTGCATGTTCGTGAGCATCGGGGCGGTATGCGCAAGGCCCGGGGGGAGCTGAGCTGTGCTTCTCTGCTGCATTTGTTACACTGCGTTAAAACCTCTTCTTCCCTCTGTGACTAACAGAGCTGAACGTGAGAAGGCATTTCTAAGTCTCTGAAATGACGAGTGGCAAGGCTGCACGGCTGGTGGCAAGCTCACCTTGCCATAGAGTTCACCTGAAATCTGCTGGCTTTGTAACAACTACTTAAGAGATATTTAAAGAAGCTTTTTCGTGTTTCCTTTCCTCACCGCCTCTCCGCAGCTGCAGTCAGCATTTGTGTTCCTTCTGAGGCTGGCAAAGCGCGCTCTGCTCATCCCATGCAAATCAG
Seq A exon
AATTGGAGCTGTAGAGTGAATAAAGTGAAGCGTTTGTTCCAAAGTGATTGGCGAGCTGGGGCTGCCTCTCTGTTCTATCACAGGTACTTGCTCCCTGGAAATACCCTACATATTTACTAGAAATAATTTCTACTGGCTAAGAGAAGTCAATTTATATGTGGAGGAATATATATGATTAG
Seq C2 exon
GGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273_MULTIEX1-1/3=C1-C2
Average complexity
C1*
Mappability confidence:
80%=100=80%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGACGAGTGGCAAGGCT
R:
TCGGAACAATGTTTTGGCTTCC
Band lengths:
250-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]